TkA02G560750 | RubberDandelionOmics

Gene overview

TkA02G560750

Reference: TK1151 Chr: Chr02 Coordinates: 144828092-144831287 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2563 bp · TkA02G560750|TK1151|cDNA

ATGAAACTAAATATACAAGGACTCCCAACCAAACAACACTCATGTGGACTCAATATCCACATATGTTATATCCCTTCATCACGTCAAATAAAGCCATGGAAGCGTCTTCTTCCGAAGAGCACACCAATGGCGGTTTCAATTTCATCACTCCCGTTCTCATCGCCAACCTTATCCACAAGGTTGAATCTGCCATTGAAACCTTCTTGTTCTACATGCTGTTTGCCAACCATCATTGCGTCCTCAAAAGATGATCAACAAAG...

CDS

Download CDS FASTA

948 bp · TkA02G560750|TK1151|CDS

ATGAAACTAAATATACAAGGACTCCCAACCAAACAACACTCATGTGGACTCAATATCCACATATGTTATATCCCTTCATCACGTCAAATAAAGCCATGGAAGCGTCTTCTTCCGAAGAGCACACCAATGGCGGTTTCAATTTCATCACTCCCGTTCTCATCGCCAACCTTATCCACAAGGTTGAATCTGCCATTGAAACCTTCTTGTTCTACATGCTGTTTGCCAACCATCATTGCGTCCTCAAAAGATGATCAACAAAG...

Protein

Download Protein FASTA

315 aa · TkA02G560750|TK1151|PROTEIN

MKLNIQGLPTKQHSCGLNIHICYIPSSRQIKPWKRLLPKSTPMAVSISSLPFSSPTLSTRLNLPLKPSCSTCCLPTIIASSKDDQQSKLGNCKRRSILLGVGASTLLPTKLVFAQEKPANYDEFVDLKDGYSYYYPSDWREFDFRGHDSAFKDRYLQLQNVRLSFIPTDKTDIHDMGPIEKVVANLVKHVYSTPTQVPDVFDMQERTTDGKTYYTFEYTLTSPNFSRAAFATIAVGNGRYYTLIVGANERRWRRVRNQLK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G560750`
TK1151 ID	TkA02G560750
OH-1004 ID	LXL04_012449
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.300
Protein coverage (%)	TK1151 84.762 / OH-1004 98.524 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G560750

Location Chr02:144828092-144831287 (-)

Description Similar to PNSL1: Photosynthetic NDH subunit of lumenal location 1, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g39470`	NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain.	Distinct functions for the two PsbP-like proteins PPL1 and PPL2 in the chloroplast thylakoid lumen of Arabidopsis.2007 · DOI: 10.1104/pp.107.105866

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012449 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0015979 photosynthesis Biological Process

GO:0048564 photosystem I assembly Biological Process

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009543 chloroplast thylakoid lumen Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0009579 thylakoid Cellular Component

GO:0009654 photosystem II oxygen evolving complex Cellular Component

GO:0019898 extrinsic component of membrane Cellular Component

GO:0031977 thylakoid lumen Cellular Component

GO:0042651 thylakoid membrane Cellular Component

KEGG gene cross-reference

ath:AT2G39470

ath:AT3G55330

ath:AT4G15510

syn:sll1418

tel:tlr2075

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.980

Rank 1 · TkA02G560750 · TK1151

Mitochondrion0.029

Rank 2 · TkA02G560750 · TK1151

Nucleus0.019

Rank 3 · TkA02G560750 · TK1151

Cytoplasm0.016

Rank 4 · TkA02G560750 · TK1151

Cell membrane0.010

Rank 5 · TkA02G560750 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14323GxGYxYP_C105-150 aa

PF18933PsbP_2118-235 aa

PF01789PsbP120-267 aa

PF31165STK_strepto_C159-267 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G560750	`PF14323`	GxGYxYP_C	105	150	0.0027	18.3
TkA02G560750	`PF18933`	PsbP_2	118	235	0.0074	16.9
TkA02G560750	`PF01789`	PsbP	120	267	3.4e-46	157.8
TkA02G560750	`PF31165`	STK_strepto_C	159	267	0.0007	20.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O80634`	Arabidopsis thaliana	sp\|O80634\|PNSL1_ARATH Photosynthetic NDH subunit of lumenal location 1, chloroplastic	57.400%	Swiss-Prot	High

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