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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G556680
Reference: TK1151 Chr: Chr02 Coordinates: 143726016-143726514 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

396 bp · TkA02G556680|TK1151|cDNA

ATGTTCAAATGTTCCAAAACATTCCTTACTGGAATCATGTCAGATTCTGAGGGGGTATCCTGTAGATTCACCACAAACCAAGAGTGGAAATGGCGACGTGAAGCTATTCGCCATGGATATTGGGATGGGAACAGAATACGAATGGAAATCGGGGTCCCTACAATTCCGGATTCCGCAAGGCTTCTAACAAAATACCCGGCTGCGTTCTTCAACTTTGATAATCAGAAGCATTTAAACAATGGAGGGGGAAGTGTAGAGCC...

CDS

Download CDS FASTA

396 bp · TkA02G556680|TK1151|CDS

ATGTTCAAATGTTCCAAAACATTCCTTACTGGAATCATGTCAGATTCTGAGGGGGTATCCTGTAGATTCACCACAAACCAAGAGTGGAAATGGCGACGTGAAGCTATTCGCCATGGATATTGGGATGGGAACAGAATACGAATGGAAATCGGGGTCCCTACAATTCCGGATTCCGCAAGGCTTCTAACAAAATACCCGGCTGCGTTCTTCAACTTTGATAATCAGAAGCATTTAAACAATGGAGGGGGAAGTGTAGAGCC...

Protein

Download Protein FASTA

131 aa · TkA02G556680|TK1151|PROTEIN

MFKCSKTFLTGIMSDSEGVSCRFTTNQEWKWRREAIRHGYWDGNRIRMEIGVPTIPDSARLLTKYPAAFFNFDNQKHLNNGGGSVEPYTLVDKLLSTTKVKVVGGISDPVAAIRTHYQQYTKNGSNDIDNR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G556680
TK1151 IDTkA02G556680
OH-1004 IDLXL04_012518
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)100.000
Protein coverage (%)TK1151 71.756 / OH-1004 7.980
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G556680
LocationChr02:143726016-143726514 (+)
DescriptionSimilar to NCOR2: Nuclear receptor corepressor 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_012518 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process
GO:0006325 chromatin organization Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0010467 gene expression Biological Process
GO:0010565 regulation of ketone metabolic process Biological Process
GO:0032355 response to estradiol Biological Process
GO:0042593 glucose homeostasis Biological Process
GO:0045820 negative regulation of glycolytic process Biological Process
GO:0045892 negative regulation of DNA-templated transcription Biological Process
GO:0045922 negative regulation of fatty acid metabolic process Biological Process
GO:0046329 negative regulation of JNK cascade Biological Process
GO:0048511 rhythmic process Biological Process
KEGG gene cross-reference
hsa:9611
hsa:9612
mmu:20602
xla:398304
xtr:613105
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.272
Rank 1 · TkA02G556680 · TK1151
Nucleus0.210
Rank 2 · TkA02G556680 · TK1151
Mitochondrion0.165
Rank 3 · TkA02G556680 · TK1151
Extracellular0.149
Rank 4 · TkA02G556680 · TK1151
Cell membrane0.094
Rank 5 · TkA02G556680 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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