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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G552530
Reference: TK1151 Chr: Chr02 Coordinates: 142564269-142568459 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3216 bp · TkA02G552530|TK1151|cDNA

CTTCACGAGTTTCCAAACTCCTTCCTAGATTTGTGAGATTTAAAGGAACATATGATTCACGTGAGATTTATCCAGCCTCATTCAACGTTCTACCCCAACAAAAACACAACCTTAAGGATGGATCACTGATCAATCTGTGTTAATGCTTAAAGGGTTCTTGGATAGGTTGTGAAGCGGAATGTGAATAACATGGAACCTTTAACAAGAAATTCGGATAACAGTTTAGAAAACGAGCTTGAATTAATACTTAGTCAAAGAGA...

CDS

Download CDS FASTA

2814 bp · TkA02G552530|TK1151|CDS

ATGGAACCTTTAACAAGAAATTCGGATAACAGTTTAGAAAACGAGCTTGAATTAATACTTAGTCAAAGAGATAGCAGGGTGATCGATCATAATCAACAAAGAGATCTAAACATGAACAGAAGCGGCAGTGCACCACCAACAGTCGAGGGTTCTTTAAGTGCAGTCGGAAGCTTATTCAGAGACTCTGATTTCTTCCAAATCGATAACAGAAATACTAGTATTAGTACCAATGGAGTGATGACAGATGAAGAACTTCGATC...

Protein

Download Protein FASTA

937 aa · TkA02G552530|TK1151|PROTEIN

MEPLTRNSDNSLENELELILSQRDSRVIDHNQQRDLNMNRSGSAPPTVEGSLSAVGSLFRDSDFFQIDNRNTSISTNGVMTDEELRSHPMYLAYYYAHGNFNPRLPPPLLSKEDWRVAQRFQVGTGSCSSEGSRDWWKKNVGSESDNGSCSSSSLFSMQPGSLGLHKDAESELIEMRKNKNSGQWIERGGGGDGLIGLTAPGMGGRRKSFADILQEGLEQRAASSSSSSSSSSNRISRPASQNAISDVMNMRGISNSNSN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G552530
TK1151 IDTkA02G552530
OH-1004 IDLXL04_017840
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)42.800
Protein coverage (%)TK1151 98.079 / OH-1004 96.774
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G552530
LocationChr02:142564269-142568459 (+)
DescriptionSimilar to APUM1: Pumilio homolog 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g10360 Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs. No verified direct reference in this release
At2g29190 Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs. No verified direct reference in this release
At2g29200 Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs. No verified direct reference in this release
At2g29140 Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs. No verified direct reference in this release
At3g20250 Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_017840 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006417 regulation of translation Biological Process
GO:0010608 post-transcriptional regulation of gene expression Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0003730 mRNA 3'-UTR binding Molecular Function
KEGG gene cross-reference
ath:AT2G29140
ath:AT2G29190
ath:AT2G29200
ath:AT3G10360
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.667
Rank 1 · TkA02G552530 · TK1151
Nucleus0.323
Rank 2 · TkA02G552530 · TK1151
Cell membrane0.116
Rank 3 · TkA02G552530 · TK1151
Lysosome / Vacuole0.044
Rank 4 · TkA02G552530 · TK1151
Golgi apparatus0.042
Rank 5 · TkA02G552530 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF21956DUF692257-68 aa
PF07990NABP128-180 aa
PF07990NABP229-279 aa
PF07990NABP315-362 aa
PF07990NABP361-410 aa
PF07990NABP427-603 aa
PF01403Sema433-512 aa
PF03195LOB464-498 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G552530PF21956DUF692257680.0001222.1
TkA02G552530PF07990NABP1281802.8e-1867.2
TkA02G552530PF07990NABP2292792.8e-1867.2
TkA02G552530PF07990NABP3153622.8e-1867.2
TkA02G552530PF07990NABP3614102.8e-1867.2
TkA02G552530PF07990NABP4276032.8e-1867.2
TkA02G552530PF01403Sema4335120.2212.2
TkA02G552530PF03195LOB4644980.08714.1
TkA02G552530PF03195LOB5035270.08714.1
TkA02G552530PF07700HNOB6056450.1412.8
TkA02G552530PF22493PUF_NOP96066901.2e-2074.6
TkA02G552530PF00806PUF6086419.1e-84274.9
TkA02G552530PF03195LOB6376780.08714.1
TkA02G552530PF00806PUF6476749.1e-84274.9
TkA02G552530PF21956DUF69226556730.0001222.1
TkA02G552530PF22493PUF_NOP96667021.2e-2074.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SS47Arabidopsis thalianasp|Q9SS47|PUM4_ARATH Pumilio homolog 446.100%Swiss-ProtMedium
Q9ZW06Arabidopsis thalianasp|Q9ZW06|PUM2_ARATH Pumilio homolog 244.500%Swiss-ProtMedium
Q9ZW07Arabidopsis thalianasp|Q9ZW07|PUM1_ARATH Pumilio homolog 143.500%Swiss-ProtMedium
Q9ZW02Arabidopsis thalianasp|Q9ZW02|PUM3_ARATH Pumilio homolog 343.700%Swiss-ProtMedium
Q9LJX4Arabidopsis thalianasp|Q9LJX4|PUM5_ARATH Pumilio homolog 525.300%Swiss-ProtLow

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