TkA02G551510 | RubberDandelionOmics

Gene overview

TkA02G551510

Reference: TK1151 Chr: Chr02 Coordinates: 142306639-142312902 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2457 bp · TkA02G551510|TK1151|cDNA

ATAACATGTCATGGGATTGCCTCATCCCTACGAAAGCTTAATAATGTGAACAAAATTACATTTTTACCATTGACCATTCTCTAGTACTAGACACGCTTTTATAGAACCGTAGAAACCTGATAGGAACTGAGTCATATAGAGATGGGTCACGGTCAGCAGTTCCAAAACTCAACCATGGTTAAGCACATATAGTTACAAGATCGTCACGTCAGTGCCCCTATTCCTCAATTTGCTGGAGCTCCACCTTGCTCCTCTCTCTC...

CDS

Download CDS FASTA

3147 bp · TkA02G551510|TK1151|CDS

ATGGGACTCTTTGACAATTTGCCTGTTCCTCAAGATAAAGCGTATTTGAGAGATGATCTTGAGAATGTAGATGAGAGCTGGACAGTGGCACGGTTTGATTCATTACCTCATGTCGTCCATATCTTGACCTCAAAAGATCGAGATGCAGAAGTCCAAACATTGAAAGACCAGAGTGATATTGTTGAAGAAGTTGTGGATGAAGTTGTTCAAACTTATCATGGTGGATTCAATAGAGCAATTCAGAATTACTCACAGATATT...

Protein

Download Protein FASTA

1048 aa · TkA02G551510|TK1151|PROTEIN

MGLFDNLPVPQDKAYLRDDLENVDESWTVARFDSLPHVVHILTSKDRDAEVQTLKDQSDIVEEVVDEVVQTYHGGFNRAIQNYSQILRLFSESTTSIRTLKVDLGNAKKVISARNKQLHQLWYRSMTLRHIISLLDQIENIAQVPNRINKLIDDNQFYAAVQVHVQSSRMLEREGLQTVGALQDVRSELSKLRGVLFYKVLESLHAHLYNTGEYSSATPSMNEKDDAIPTTTVAAFSMTHSQSLSRRTRLQKGDSHVGIA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G551510`
TK1151 ID	TkA02G551510
OH-1004 ID	LXL04_012584
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.800
Protein coverage (%)	TK1151 99.141 / OH-1004 97.376 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G551510

Location Chr02:142306639-142312902 (+)

Description Similar to SEC8: Exocyst complex component SEC8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g10380`	Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane during regulated or polarized secretion.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012584 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000212 meiotic spindle organization Biological Process

GO:0000281 mitotic cytokinesis Biological Process

GO:0000916 actomyosin contractile ring contraction Biological Process

GO:0006887 exocytosis Biological Process

GO:0006893 Golgi to plasma membrane transport Biological Process

GO:0006904 vesicle docking involved in exocytosis Biological Process

GO:0007009 plasma membrane organization Biological Process

GO:0007110 meiosis I cytokinesis Biological Process

GO:0007111 meiosis II cytokinesis Biological Process

GO:0007286 spermatid development Biological Process

GO:0015031 protein transport Biological Process

GO:0016080 synaptic vesicle targeting Biological Process

KEGG gene cross-reference

ath:AT3G10380

dme:Dmel_CG2095

hsa:60412

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.536

Rank 1 · TkA02G551510 · TK1151

Golgi apparatus0.263

Rank 2 · TkA02G551510 · TK1151

Cell membrane0.241

Rank 3 · TkA02G551510 · TK1151

Lysosome / Vacuole0.190

Rank 4 · TkA02G551510 · TK1151

Nucleus0.142

Rank 5 · TkA02G551510 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05712MRG13-82 aa

PF04048Sec8_N16-150 aa

PF10475Vps54_N27-204 aa

PF20651EXOC6_Sec15_N62-216 aa

PF23268RIN164-109 aa

PF23268RIN1145-198 aa

PF20652Sec8_C315-415 aa

PF05712MRG424-444 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G551510	`PF05712`	MRG	13	82	0.16	12.0
TkA02G551510	`PF04048`	Sec8_N	16	150	1.6e-34	119.6
TkA02G551510	`PF10475`	Vps54_N	27	204	9.5e-08	32.4
TkA02G551510	`PF20651`	EXOC6_Sec15_N	62	216	2.4e-07	31.6
TkA02G551510	`PF23268`	RIN1	64	109	0.11	13.5
TkA02G551510	`PF23268`	RIN1	145	198	0.11	13.5
TkA02G551510	`PF20652`	Sec8_C	315	415	0.0042	17.2
TkA02G551510	`PF05712`	MRG	424	444	0.16	12.0
TkA02G551510	`PF10475`	Vps54_N	696	721	9.5e-08	32.4
TkA02G551510	`PF23268`	RIN1	703	720	0.11	13.5
TkA02G551510	`PF20651`	EXOC6_Sec15_N	843	879	2.4e-07	31.6
TkA02G551510	`PF05712`	MRG	947	999	0.16	12.0
TkA02G551510	`PF04048`	Sec8_N	975	1022	1.6e-34	119.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q93YU5`	Arabidopsis thaliana	sp\|Q93YU5\|SEC8_ARATH Exocyst complex component SEC8	67.200%	Swiss-Prot	High

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