LXL04_012584 | RubberDandelionOmics

Gene overview

LXL04_012584

Reference: OH-1004 Chr: Chr03 Coordinates: 15129200-15134691 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3204 bp · LXL04_012584|LXL04_012584|OH1004|cDNA

ATGGGACTCTTTGACAATTTGCCTGTTCCTCAAGATAAAGCGTATTTGAGAGATGATCTTGAGAATGTAGATGAGAGCTGGACAGTGGCACGGTTTGATTCATTACCTCATGTCGTCCATATCTTGACCTCAAAAGATCGAGATGCAGAAGTCCAAACATTGAAAGACCAGAGTGATATTGTTGAAGAAGTTGTGGATGAAGTTGTTCAAACTTATCATGGTGGATTCAATAGAGCAATTCAGAATTACTCACAGATATT...

CDS

Download CDS FASTA

3204 bp · LXL04_012584|LXL04_012584|OH1004|CDS

ATGGGACTCTTTGACAATTTGCCTGTTCCTCAAGATAAAGCGTATTTGAGAGATGATCTTGAGAATGTAGATGAGAGCTGGACAGTGGCACGGTTTGATTCATTACCTCATGTCGTCCATATCTTGACCTCAAAAGATCGAGATGCAGAAGTCCAAACATTGAAAGACCAGAGTGATATTGTTGAAGAAGTTGTGGATGAAGTTGTTCAAACTTATCATGGTGGATTCAATAGAGCAATTCAGAATTACTCACAGATATT...

Protein

Download Protein FASTA

1067 aa · LXL04_012584|LXL04_012584|OH1004|PROTEIN

MGLFDNLPVPQDKAYLRDDLENVDESWTVARFDSLPHVVHILTSKDRDAEVQTLKDQSDIVEEVVDEVVQTYHGGFNRAIQNYSQILRLFSESTTSIRTLKVDLGNAKKVISARNKQLHQLWYRSMTLRHIISLLDQIENIAQVPNRINKLIDDNQFYAAVQVHVQSSRMLEREGLQTVGALQDVRSELSKLRGVLFYKVLESLHAHLYNTGEYSSATPSMNEKDDAIPTTTVAAFSMTHSQSLSRRTRLQKGDSHVGIA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_012584`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_012584

Location Chr03:15129200-15134691 (-)

Description Similar to SEC8: Exocyst complex component SEC8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g10380`	Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane during regulated or polarized secretion.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012584 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000212 meiotic spindle organization Biological Process

GO:0000281 mitotic cytokinesis Biological Process

GO:0000916 actomyosin contractile ring contraction Biological Process

GO:0006887 exocytosis Biological Process

GO:0006893 Golgi to plasma membrane transport Biological Process

GO:0006904 vesicle docking involved in exocytosis Biological Process

GO:0007009 plasma membrane organization Biological Process

GO:0007110 meiosis I cytokinesis Biological Process

GO:0007111 meiosis II cytokinesis Biological Process

GO:0007286 spermatid development Biological Process

GO:0015031 protein transport Biological Process

GO:0016080 synaptic vesicle targeting Biological Process

KEGG gene cross-reference

ath:AT3G10380

dme:Dmel_CG2095

hsa:60412

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.518

Rank 1 · LXL04_012584 · OH-1004

Golgi apparatus0.290

Rank 2 · LXL04_012584 · OH-1004

Cell membrane0.224

Rank 3 · LXL04_012584 · OH-1004

Lysosome / Vacuole0.203

Rank 4 · LXL04_012584 · OH-1004

Nucleus0.137

Rank 5 · LXL04_012584 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04048.21Sec8_N16-150 aa

PF10475.16Vps54_N27-204 aa

PF20651.4EXOC6_Sec15_N62-216 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_012584	`PF04048.21`	Sec8_N	16	150	1.3e-34	119.8
LXL04_012584	`PF10475.16`	Vps54_N	27	204	9.8e-08	32.4
LXL04_012584	`PF20651.4`	EXOC6_Sec15_N	62	216	2.4e-07	31.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q93YU5`	Arabidopsis thaliana	Exocyst complex component SEC8	67.606%	Swiss-Prot	strong database homology

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