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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G550900
Reference: TK1151 Chr: Chr02 Coordinates: 142153611-142153977 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

303 bp · TkA02G550900|TK1151|cDNA

ATGTGGGGGTGTTCATTTTTTATAAAGAAAAGGAAGAAAAGCCGTTGGGAGAAGGAAGAAAAGGCCGAAGGCCGCGTTCCTTCCCATCGCCAAACCAACGCGAGGCAACGCCTCAAGGCCAAAACGCGCATAGGGCGCGGTGTTCCCTCCTCCACGACGGCGTCGTCGATGCCACCTAGGCTGCGTTCTCGTGGCGTTATACCCGTACCCAGTAGCCTTATAGTGTGGTTGATCGCTAATTTTTGTTTCATATACTATTT...

CDS

Download CDS FASTA

303 bp · TkA02G550900|TK1151|CDS

ATGTGGGGGTGTTCATTTTTTATAAAGAAAAGGAAGAAAAGCCGTTGGGAGAAGGAAGAAAAGGCCGAAGGCCGCGTTCCTTCCCATCGCCAAACCAACGCGAGGCAACGCCTCAAGGCCAAAACGCGCATAGGGCGCGGTGTTCCCTCCTCCACGACGGCGTCGTCGATGCCACCTAGGCTGCGTTCTCGTGGCGTTATACCCGTACCCAGTAGCCTTATAGTGTGGTTGATCGCTAATTTTTGTTTCATATACTATTT...

Protein

Download Protein FASTA

100 aa · TkA02G550900|TK1151|PROTEIN

MWGCSFFIKKRKKSRWEKEEKAEGRVPSHRQTNARQRLKAKTRIGRGVPSSTTASSMPPRLRSRGVIPVPSSLIVWLIANFCFIYYFWQDSPLNYTSSVT

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G550900
TK1151 IDTkA02G550900
OH-1004 IDLXL04_014038
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)54.500
Protein coverage (%)TK1151 55.000 / OH-1004 19.928
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G550900
LocationChr02:142153611-142153977 (-)
DescriptionSimilar to HSP70: Heat shock 70 kDa protein (Fragment)
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014038 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000209 protein polyubiquitination Biological Process
GO:0002181 cytoplasmic translation Biological Process
GO:0006457 protein folding Biological Process
GO:0006606 protein import into nucleus Biological Process
GO:0006616 SRP-dependent cotranslational protein targeting to membrane, translocation Biological Process
GO:0006626 protein targeting to mitochondrion Biological Process
GO:0009267 cellular response to starvation Biological Process
GO:0034605 cellular response to heat Biological Process
GO:0035617 stress granule disassembly Biological Process
GO:0035719 tRNA import into nucleus Biological Process
GO:0042026 protein refolding Biological Process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process
KEGG gene cross-reference
cbs:COXBURSA331_A1439
cbu:CBU_1290
sce:YAL005C
sce:YLL024C
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.413
Rank 1 · TkA02G550900 · TK1151
Cytoplasm0.336
Rank 2 · TkA02G550900 · TK1151
Mitochondrion0.164
Rank 3 · TkA02G550900 · TK1151
Cell membrane0.135
Rank 4 · TkA02G550900 · TK1151
Endoplasmic reticulum0.090
Rank 5 · TkA02G550900 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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