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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G544050
Reference: TK1151 Chr: Chr02 Coordinates: 140308983-140312388 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2841 bp · TkA02G544050|TK1151|cDNA

TTCATATTAGGATAAAGTATGAGAAAATGAGCTTGAGCTTTCTTTGTTAACAAGAAAGGTTCCTATGCTTCTATATACATACACACACTGACACAAGACCCTTCCTTCCCCAATTATAATCCTCTTCAAACCCTACCTCCTAAATTCCCAATTCTTCGTTTCCTTTCACCAATCTAAACCCAGTAATCCGTTTATTCTACGCCATGAGTGATCAACCTGAATCATCCGACCCCAAGGGGACTAAGCGGGATTTTAGTACC...

CDS

Download CDS FASTA

2427 bp · TkA02G544050|TK1151|CDS

ATGAGTGATCAACCTGAATCATCCGACCCCAAGGGGACTAAGCGGGATTTTAGTACCGCGATTCTTGAGCGAAAGAAGGCGGCGAATAGACTCGTCGTTGATGAAGCCATCAACGATGATAACTCCGTTGTTTCTATGCATCCGGAGACCATGGAAAAACTTCAACTGTTCAGAGGCGATACCATCCTGATTAAGGGCAAGAAAAGGAGAGATACAATCTGTATCGCACTTGCTGATGACACATGTGAGGAACCAAAAAT...

Protein

Download Protein FASTA

808 aa · TkA02G544050|TK1151|PROTEIN

MSDQPESSDPKGTKRDFSTAILERKKAANRLVVDEAINDDNSVVSMHPETMEKLQLFRGDTILIKGKKRRDTICIALADDTCEEPKIRMNKVVRSNLRVRLGDVISVHQCADVKYGKRVHILPIDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDYFLVRGGMRSVEFKVIETEPAEYCVVAPDTEIFCEGDPVIREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIAR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G544050
TK1151 IDTkA02G544050
OH-1004 IDLXL04_012704
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 93.088
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G544050
LocationChr02:140308983-140312388 (+)
DescriptionSimilar to CDC48: Cell division cycle protein 48 homolog
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g53230 Probably functions in cell division and growth processes. No verified direct reference in this release
At5g03340 Probably functions in cell division and growth processes. No verified direct reference in this release
At3g09840 Probably functions in cell division and growth processes (Probable).
Ubiquitin-dependent chloroplast-associated protein degradation in plants.2019 · DOI: 10.1126/science.aav4467
The CDC48 complex mediates ubiquitin-dependent degradation of intra-chloroplast proteins in plants.2022 · DOI: 10.1016/j.celrep.2022.110664

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_012704 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0009846 pollen germination Biological Process
GO:0009860 pollen tube growth Biological Process
GO:0010498 proteasomal protein catabolic process Biological Process
GO:0030162 regulation of proteolysis Biological Process
GO:0030970 retrograde protein transport, ER to cytosol Biological Process
GO:0031348 negative regulation of defense response Biological Process
GO:0031648 protein destabilization Biological Process
GO:0034614 cellular response to reactive oxygen species Biological Process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process
GO:0045732 positive regulation of protein catabolic process Biological Process
GO:0051228 mitotic spindle disassembly Biological Process
KEGG gene cross-reference
ath:AT3G09840
ath:AT3G53230
ath:AT5G03340
cann:107847567
gmx:547850
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.620
Rank 1 · TkA02G544050 · TK1151
Nucleus0.397
Rank 2 · TkA02G544050 · TK1151
Cell membrane0.086
Rank 3 · TkA02G544050 · TK1151
Endoplasmic reticulum0.070
Rank 4 · TkA02G544050 · TK1151
Lysosome / Vacuole0.047
Rank 5 · TkA02G544050 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01443Viral_helicase117-46 aa
PF13401AAA_2220-57 aa
PF02359CDC48_N30-111 aa
PF01568Molydop_binding35-67 aa
PF09336Vps4_C78-97 aa
PF02933CDC48_2131-194 aa
PF24389ORC-CDC6-like232-261 aa
PF00005ABC_tran239-266 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G544050PF01443Viral_helicase117466.2e-0523.6
TkA02G544050PF13401AAA_2220571.2e-0939.3
TkA02G544050PF02359CDC48_N301115.7e-2381.6
TkA02G544050PF01568Molydop_binding35670.1113.3
TkA02G544050PF09336Vps4_C78970.0001122.8
TkA02G544050PF02933CDC48_21311941.4e-1144.6
TkA02G544050PF24389ORC-CDC6-like2322610.04813.1
TkA02G544050PF00005ABC_tran2392661.6e-0526.2
TkA02G544050PF25199nSTAND_NTPase52403211.7e-0525.4
TkA02G544050PF12775AAA_72402662.8e-0524.4
TkA02G544050PF02367TsaE2402670.0001222.8
TkA02G544050PF05673DUF8152402670.0001321.9
TkA02G544050PF04851ResIII2402960.0007120.2
TkA02G544050PF06414Zeta_toxin2412660.0001921.7
TkA02G544050PF13191AAA_162423442.2e-1145.3
TkA02G544050PF13555AAA_292422570.05713.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SCN8Arabidopsis thalianasp|Q9SCN8|CD48D_ARATH Cell division control protein 48 homolog D88.400%Swiss-ProtHigh
Q9LZF6Arabidopsis thalianasp|Q9LZF6|CD48E_ARATH Cell division control protein 48 homolog E88.900%Swiss-ProtHigh
P54609Arabidopsis thalianasp|P54609|CD48A_ARATH Cell division control protein 48 homolog A88.500%Swiss-ProtHigh

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