TkA02G540320 | RubberDandelionOmics

Gene overview

TkA02G540320

Reference: TK1151 Chr: Chr02 Coordinates: 139387541-139388488 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

918 bp · TkA02G540320|TK1151|cDNA

ATGGCAAAATCAGGAAAAGGTCGGAGGTTCATTGTCTCCTCTATCATCTTCATCGCGTTTCTTTGCACCATTGCTTCCATAAATGAACTCCGATTTGACCATTTATTACGGTTTAGCCGATGTGCCCTAAAGTTGGAGGACACTCTACCGGTAAACGCCCCCGTAAACCCTTCAACAGACGAAATCCGTGTCCTTCTCGGAATCCTAACCCTACCGGACCACTACCACCGCCGCCACTTCCTCCGCCTCATTTACGCCAC...

CDS

Download CDS FASTA

918 bp · TkA02G540320|TK1151|CDS

ATGGCAAAATCAGGAAAAGGTCGGAGGTTCATTGTCTCCTCTATCATCTTCATCGCGTTTCTTTGCACCATTGCTTCCATAAATGAACTCCGATTTGACCATTTATTACGGTTTAGCCGATGTGCCCTAAAGTTGGAGGACACTCTACCGGTAAACGCCCCCGTAAACCCTTCAACAGACGAAATCCGTGTCCTTCTCGGAATCCTAACCCTACCGGACCACTACCACCGCCGCCACTTCCTCCGCCTCATTTACGCCAC...

Protein

Download Protein FASTA

305 aa · TkA02G540320|TK1151|PROTEIN

MAKSGKGRRFIVSSIIFIAFLCTIASINELRFDHLLRFSRCALKLEDTLPVNAPVNPSTDEIRVLLGILTLPDHYHRRHFLRLIYATQQMVPGAKVDVKFVFCNLTKEDQRVLIALEIMQYDDIIILNCKENMNNGKSYTYFSSLPDMFNEDYHYVMKGDDDAYFRLGQLVESLRVLPREDLYYGYTIPCDNMNPYGHYMSGMGYLISWDIVEWLKVSNIPKAHIDGPEDKVFGDWMEQGKKGKNRHNAKWSMYNYPDPP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G540320`
TK1151 ID	TkA02G540320
OH-1004 ID	LXL04_012748
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	96.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA02G540320`
Location	Chr02:139387541-139388488 (+)
Description	Similar to GALT3: Hydroxyproline O-galactosyltransferase GALT3
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_012748` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0010405 arabinogalactan protein metabolic process Biological Process GO:0048354 mucilage biosynthetic process involved in seed coat development Biological Process GO:0080147 root hair cell development Biological Process GO:0180062 protein O-linked glycosylation via galactose Biological Process GO:0000139 Golgi membrane Cellular Component GO:0005794 Golgi apparatus Cellular Component GO:0008378 galactosyltransferase activity Molecular Function GO:0030246 carbohydrate binding Molecular Function GO:1990714 hydroxyproline O-galactosyltransferase activity Molecular Function
KEGG gene cross-reference	ath:AT3G06440 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.800

Rank 1 · TkA02G540320 · TK1151

Endoplasmic reticulum0.104

Rank 2 · TkA02G540320 · TK1151

Cytoplasm0.090

Rank 3 · TkA02G540320 · TK1151

Cell membrane0.063

Rank 4 · TkA02G540320 · TK1151

Extracellular0.051

Rank 5 · TkA02G540320 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01762Galactosyl_T77-188 aa

PF01762Galactosyl_T192-238 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G540320	`PF01762`	Galactosyl_T	77	188	3.6e-12	47.2
TkA02G540320	`PF01762`	Galactosyl_T	192	238	3.6e-12	47.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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