RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G533440
Reference: TK1151 Chr: Chr02 Coordinates: 137503599-137506058 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1847 bp · TkA02G533440|TK1151|cDNA

CATGGATTCGTTTCTAAAAAAAACCTACCCACTACCACCAAGTACGAAGTACCATTACAAGCTCCTGCAGCAGAAGAACTGCTCACAACCGCCTTCCCTTCTGAGCTCTTCGTTGTTTCGAATCAGTTTCTTCATTGATTTTAGTCTTTAGGTCTCAGCAATGCCGAAAGGAGATGATTATATGATAAAGAAGAAGAACAAATCGACCAGGAAGAAATTGCGGAGCGAGTCATCGAAGGTCTCTAATCGCGTCGCCGCTA...

CDS

Download CDS FASTA

1047 bp · TkA02G533440|TK1151|CDS

ATGCCGAAAGGAGATGATTATATGATAAAGAAGAAGAACAAATCGACCAGGAAGAAATTGCGGAGCGAGTCATCGAAGGTCTCTAATCGCGTCGCCGCTATCATCGCACAAAAAAAGCGTCGTCAGTCCGGCAAACGCAGAATGTGTCAGGGAATGTGTTTTAGCCTCCCTACTCCTGAAGATCCTTTCTTAGACAAACCTCCAGCTCATGATTCCAAGAAAAAAGACAAGACAAAGAAGACTAAGAAAGATAAGCCATC...

Protein

Download Protein FASTA

348 aa · TkA02G533440|TK1151|PROTEIN

MPKGDDYMIKKKNKSTRKKLRSESSKVSNRVAAIIAQKKRRQSGKRRMCQGMCFSLPTPEDPFLDKPPAHDSKKKDKTKKTKKDKPSKGVDNLSENGTDPSQNKRKATDEPQSNGKNQVHKRPKAEKDEGCPSKFLISCLKTIQDMMHHNEAFEPGKPLFFHSWGFDFWRCYSSGKHVLETSGSSTMEQIAWIASAAVDTITNKEKEGVSFTSPYLLFLVPSQQKATEVRSVCKPLKAFGIHTVSLHSGASIDHQILGLK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G533440
TK1151 IDTkA02G533440
OH-1004 IDLXL04_012878
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G533440
LocationChr02:137503599-137506058 (+)
DescriptionSimilar to ddx5: Probable ATP-dependent RNA helicase ddx5
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_012878 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Biological Process
GO:0006364 rRNA processing Biological Process
GO:0008104 intracellular protein localization Biological Process
GO:1903241 U2-type prespliceosome assembly Biological Process
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0015030 Cajal body Cellular Component
GO:0016020 membrane Cellular Component
GO:0016607 nuclear speck Cellular Component
GO:0071004 U2-type prespliceosome Cellular Component
GO:0003676 nucleic acid binding Molecular Function
KEGG gene cross-reference
ddi:DDB_G0293036
gga:419959
hsa:11325
xla:380261
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.928
Rank 1 · TkA02G533440 · TK1151
Cytoplasm0.131
Rank 2 · TkA02G533440 · TK1151
Cell membrane0.024
Rank 3 · TkA02G533440 · TK1151
Mitochondrion0.017
Rank 4 · TkA02G533440 · TK1151
Endoplasmic reticulum0.013
Rank 5 · TkA02G533440 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05994FragX_IP77-150 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G533440PF05994FragX_IP771500.78.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser