TkA02G532920 | RubberDandelionOmics

Gene overview

TkA02G532920

Reference: TK1151 Chr: Chr02 Coordinates: 137368165-137371471 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1138 bp · TkA02G532920|TK1151|cDNA

AATGTCATGAGTATAAATCAATCTTTTTATAATTTCTAGAGTACAGTAATATTGTTACTGTATCCCACGTCAGTCCAGATAGTTGGTGGATTTTTGTGAGGTGAGAAAAGGAAGAGGAATGGAGCGCATTTTCTCAGGTATTGGATACGGGCAAGTGGGAATGATGTGGGAGCAAGTACGGGCGCCATTTATCGTGCCATTTATGAAACTTATGGTGATAATGTGTTTAGCCATGTCGGTGATGCTATTCGTGGAGCGTG...

CDS

Download CDS FASTA

1038 bp · TkA02G532920|TK1151|CDS

ATGGAGCGCATTTTCTCAGGTATTGGATACGGGCAAGTGGGAATGATGTGGGAGCAAGTACGGGCGCCATTTATCGTGCCATTTATGAAACTTATGGTGATAATGTGTTTAGCCATGTCGGTGATGCTATTCGTGGAGCGTGTATGTATGGGTATTGTTATTGTTGTTGTTAAGTTGATGAACTATAAGCTTGAAAAAAGATACAAATGGGAGGCAATTAAGGAGGATTTGGAGACGGGGAATTCGGTTTACCCTATGGT...

Protein

Download Protein FASTA

345 aa · TkA02G532920|TK1151|PROTEIN

MERIFSGIGYGQVGMMWEQVRAPFIVPFMKLMVIMCLAMSVMLFVERVCMGIVIVVVKLMNYKLEKRYKWEAIKEDLETGNSVYPMVLVQIPMYNEKEVYQLSIGAACGLSWPSDRIIIQVLDDSTDPIIKDLVELECRRWAGKGINIKYEIRGNRNGYKAGALKQGMKHPYVNQCEFVAIFDADFQPDPDFLWRTIPFLAHNPELALVQARWKFVNSDECLMTRMQEMSLDYHFYVEQEAGSATHAFFGFNGTAGVWRI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G532920`
TK1151 ID	TkA02G532920
OH-1004 ID	LXL04_012877
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	98.500
Protein coverage (%)	TK1151 99.710 / OH-1004 65.900 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G532920

Location Chr02:137368165-137371471 (+)

Description Similar to CSLA9: Glucomannan 4-beta-mannosyltransferase 9

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g03760`	Possesses glucomannan synthase and mannan synthase activities in vitro.	Agrobacterium-mediated root transformation is inhibited by mutation of an Arabidopsis cellulose synthase-like gene.2003 · DOI: 10.1104/pp.103.030726
`At5g22740`	Possesses glucomannan synthase and mannan synthase activities in vitro.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0625700`	Probable mannan synthase which consists of a 4-beta-mannosyltransferase activity on mannan using GDP-mannose.	No verified direct reference in this release
`Os02g0192500`	Possesses glucomannan synthase and mannan synthase activities in vitro.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_012877 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009294 DNA-mediated transformation Biological Process

GO:0009617 response to bacterium Biological Process

GO:0010192 mucilage biosynthetic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005797 Golgi medial cisterna Cellular Component

GO:0047259 glucomannan 4-beta-mannosyltransferase activity Molecular Function

GO:0051753 mannan synthase activity Molecular Function

KEGG gene cross-reference

ath:AT1G23480

ath:AT5G03760

ath:AT5G22740

dosa:Os02g0192500

dosa:Os06g0625700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.274

Rank 1 · TkA02G532920 · TK1151

Cell membrane0.226

Rank 2 · TkA02G532920 · TK1151

Cytoplasm0.219

Rank 3 · TkA02G532920 · TK1151

Golgi apparatus0.204

Rank 4 · TkA02G532920 · TK1151

Nucleus0.122

Rank 5 · TkA02G532920 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13536EmrE34-95 aa

PF06365CD34_antigen39-76 aa

PF13506Glyco_transf_2156-323 aa

PF13641Glyco_tranf_2_385-320 aa

PF00535Glycos_transf_290-244 aa

PF13632Glyco_trans_2_3179-323 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G532920	`PF13536`	EmrE	34	95	0.073	13.2
TkA02G532920	`PF06365`	CD34_antigen	39	76	0.33	11.6
TkA02G532920	`PF13506`	Glyco_transf_21	56	323	4.9e-07	29.6
TkA02G532920	`PF13641`	Glyco_tranf_2_3	85	320	1.6e-14	54.9
TkA02G532920	`PF00535`	Glycos_transf_2	90	244	4.6e-10	40.4
TkA02G532920	`PF13632`	Glyco_trans_2_3	179	323	1.3e-19	71.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LZR3`	Arabidopsis thaliana	sp\|Q9LZR3\|CSLA9_ARATH Glucomannan 4-beta-mannosyltransferase 9	78.900%	Swiss-Prot	High
`Q9FNI7`	Arabidopsis thaliana	sp\|Q9FNI7\|CSLA2_ARATH Glucomannan 4-beta-mannosyltransferase 2	74.400%	Swiss-Prot	High
`Q67VS7`	Oryza sativa subsp. japonica	sp\|Q67VS7\|CSLA9_ORYSJ Probable glucomannan 4-beta-mannosyltransferase 9	72.300%	Swiss-Prot	High
`Q7PC76`	Oryza sativa subsp. japonica	sp\|Q7PC76\|CSLA1_ORYSJ Glucomannan 4-beta-mannosyltransferase 1	71.900%	Swiss-Prot	High

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