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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G532530
Reference: TK1151 Chr: Chr02 Coordinates: 137253334-137255966 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1597 bp · TkA02G532530|TK1151|cDNA

GAAGAGCCGGCCCACGCAGTCACAAAGTCGCCTCTCGAATCGTTCGATGGATATCCGCTTCGATACGCTCACACACAGTTGACCCGCGATCATGATCTAGTTTATATAGTTGACTTTCGTTCTCATCTACTTTAGTACCACGAACAGAATAAAAGTTATAAAAACTTCTCAAACTTGCCTCAAAATCCTCCACCATCCTGCAAAACATGGAAGGCGGTGTCGCGGCGGAGCAAGGAACGGTGACTTGTGCGTCATGGATC...

CDS

Download CDS FASTA

1167 bp · TkA02G532530|TK1151|CDS

ATGGAAGGCGGTGTCGCGGCGGAGCAAGGAACGGTGACTTGTGCGTCATGGATCAAGCGGCCGGAGAATGCGCATCTAGTTGCCTTAGGGAAGTTGAAGCACGAAAATCACCCTGCCTCTTTCCAAATTTTCTCTTTCGATCATCTCACCACATCTCTCTCGTCCTCTCCGTCGGCCAGTTTCGAGTTTGAAGATGGATGTGATCCAGTGAGCCTCGCGGTGCATCCGAGCGGTGACGATATTGTCTGCTCTACTACCAA...

Protein

Download Protein FASTA

388 aa · TkA02G532530|TK1151|PROTEIN

MEGGVAAEQGTVTCASWIKRPENAHLVALGKLKHENHPASFQIFSFDHLTTSLSSSPSASFEFEDGCDPVSLAVHPSGDDIVCSTTKGGCRLFQLYVQEKSVKLLYKDLKPLQDVGPQKCLAFSTDGSKFATGGVDGHLRIYEWPSMRVIADHQRAHPGFSDMDFSLDSEFLATTSTDGSGRIWNANDGVPVNSLTRNSDEKIELCRFSKDGTKPFLFCTVQKGNKSVTVVYDISTWNKIGFKRLLRKPACVMSISLDGK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G532530
TK1151 IDTkA02G532530
OH-1004 IDLXL04_012884
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G532530
LocationChr02:137253334-137255966 (+)
DescriptionSimilar to PHF1: SEC12-like protein 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g52190 May promote PHT1-1/PHT1;1 trafficking from the endoplasmic reticulum to the plasma membrane during inorganic phosphate uptake.
PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR1 is a plant-specific SEC12-related protein that enables the endoplasmic reticulum exit of a high-affinity phosphate transporter in Arabidopsis.2005 · DOI: 10.1105/tpc.105.036640

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_012884 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000381 regulation of alternative mRNA splicing, via spliceosome Biological Process
GO:0000398 mRNA splicing, via spliceosome Biological Process
GO:0003400 regulation of COPII vesicle coating Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006817 phosphate ion transport Biological Process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport Biological Process
GO:0008380 RNA splicing Biological Process
GO:0015031 protein transport Biological Process
GO:0016036 cellular response to phosphate starvation Biological Process
GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process
GO:0048208 COPII vesicle coating Biological Process
GO:0090110 COPII-coated vesicle cargo loading Biological Process
KEGG gene cross-reference
ath:AT2G01470
ath:AT3G52190
gga:427377
mmu:50907
rno:58842
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.509
Rank 1 · TkA02G532530 · TK1151
Nucleus0.196
Rank 2 · TkA02G532530 · TK1151
Golgi apparatus0.156
Rank 3 · TkA02G532530 · TK1151
Cytoplasm0.153
Rank 4 · TkA02G532530 · TK1151
Cell membrane0.117
Rank 5 · TkA02G532530 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23381Beta-prop_IFT122_1st66-94 aa
PF25174Beta-prop_THOC368-213 aa
PF00400WD4068-92 aa
PF23393Beta-prop_WDR90_POC16_2nd68-97 aa
PF24796WDR5569-224 aa
PF16529Ge1_WD4070-105 aa
PF23414Beta-prop_EML_271-213 aa
PF24814WD40_Prp1971-239 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G532530PF23381Beta-prop_IFT122_1st66947.6e-1762.3
TkA02G532530PF25174Beta-prop_THOC3682133.2e-2073.0
TkA02G532530PF00400WD4068921.5e-1557.6
TkA02G532530PF23393Beta-prop_WDR90_POC16_2nd68972.5e-0627.6
TkA02G532530PF24796WDR55692244.3e-1246.4
TkA02G532530PF16529Ge1_WD40701050.004416.8
TkA02G532530PF23414Beta-prop_EML_2712132e-2074.0
TkA02G532530PF24814WD40_Prp19712391.1e-1661.5
TkA02G532530PF25175Beta-prop_WDR5711072.6e-1660.5
TkA02G532530PF24805EIF3I71924.3e-1453.1
TkA02G532530PF12894ANAPC4_WD4071973.6e-0731.0
TkA02G532530PF24782WD40_MABP1-WDR62_2nd711041.1e-0628.6
TkA02G532530PF25391WD40_Gbeta711000.0413.6
TkA02G532530PF30552CFAP251_N751437.1e-0522.8
TkA02G532530PF23410Beta-prop_VPS8781581.3e-0628.4
TkA02G532530PF25171Beta-prop_WDR36-Utp21_1st791842.9e-0937.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8GYE0Arabidopsis thalianasp|Q8GYE0|PHF1_ARATH SEC12-like protein 158.100%Swiss-ProtHigh

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