TkA02G513360 | RubberDandelionOmics

Gene overview

TkA02G513360

Reference: TK1151 Chr: Chr02 Coordinates: 131784771-131786355 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

921 bp · TkA02G513360|TK1151|cDNA

TTTACACCTTAATGAATTTAAAAGAAGGTGGGTACCCGGGTAGACCATGTTGAATTTGGTTTAAAATACAAATCACGGTATTCAAACTGACTGCTGACCACCAGACCAGTACAATAAAAAGCACAGCTAAAGTTGAAAGGAAAAGAAATGGGGTTTTATTTTCCCATTATTCATTAACAGTGCGCCTCGAGATCGGGTCTAGGGTTCCTCATCTTCTTCAATTTCCACCTCCCTTCATACCGTTACTCATCTCCGACAAT...

CDS

Download CDS FASTA

357 bp · TkA02G513360|TK1151|CDS

ATGCCGGAGGAAGATCTTTTAGAGCTCAAGTTTCGGTTGCTTGATGGATCGGATATTGGTCCGTTTCGATACTCTCCGGCTTCCACCGTCGCCATGCTTAAGGAACGAATTGTTGCCGAATGGCCCAAAGATAAAAAGGGCGGACCAAAAACAGCAAACGACATCAAATTAATAAACGCGGGGAAAATATTGGAAAACAACAAAACTGTTGGACAGTGTAGAACACCTTTTGGCGAGCTTCCAAAAGGGGTAATTACTAT...

Protein

Download Protein FASTA

118 aa · TkA02G513360|TK1151|PROTEIN

MPEEDLLELKFRLLDGSDIGPFRYSPASTVAMLKERIVAEWPKDKKGGPKTANDIKLINAGKILENNKTVGQCRTPFGELPKGVITMHAVVQMSLTKTKTEKKIDEAPKTNICACTIL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G513360`
TK1151 ID	TkA02G513360
OH-1004 ID	LXL04_013186
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G513360

Location Chr02:131784771-131786355 (-)

Description Similar to MUB4: Membrane-anchored ubiquitin-fold protein 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g26980`	May serve as docking site to facilitate the association of other proteins to the plasma membrane.	No verified direct reference in this release
`At4g24990`	May serve as docking site to facilitate the association of other proteins to the plasma membrane.	No verified direct reference in this release
`At1g22050`	May serve as docking site to facilitate the association of other proteins to the plasma membrane.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0393300`	May serve as docking site to facilitate the association of other proteins to the plasma membrane.	No verified direct reference in this release
`Os02g0750600`	May serve as docking site to facilitate the association of other proteins to the plasma membrane.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013186 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT1G22050

ath:AT3G26980

ath:AT4G24990

dosa:Os02g0750600

dosa:Os04g0393300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.725

Rank 1 · TkA02G513360 · TK1151

Cytoplasm0.225

Rank 2 · TkA02G513360 · TK1151

Nucleus0.112

Rank 3 · TkA02G513360 · TK1151

Endoplasmic reticulum0.069

Rank 4 · TkA02G513360 · TK1151

Golgi apparatus0.038

Rank 5 · TkA02G513360 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13881Rad60-SLD_25-116 aa

PF00240ubiquitin11-73 aa

PF01799Fer2_286-116 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G513360	`PF13881`	Rad60-SLD_2	5	116	6e-44	149.4
TkA02G513360	`PF00240`	ubiquitin	11	73	0.00016	22.1
TkA02G513360	`PF01799`	Fer2_2	86	116	0.084	13.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LSD8`	Arabidopsis thaliana	sp\|Q9LSD8\|MUB4_ARATH Membrane-anchored ubiquitin-fold protein 4	71.700%	Swiss-Prot	High
`Q9SW27`	Arabidopsis thaliana	sp\|Q9SW27\|MUB3_ARATH Membrane-anchored ubiquitin-fold protein 3	67.800%	Swiss-Prot	High
`Q8GWJ6`	Arabidopsis thaliana	sp\|Q8GWJ6\|MUB6_ARATH Membrane-anchored ubiquitin-fold protein 6	55.200%	Swiss-Prot	High
`Q7XRU4`	Oryza sativa subsp. japonica	sp\|Q7XRU4\|MUB4_ORYSJ Membrane-anchored ubiquitin-fold protein 4	61.200%	Swiss-Prot	High
`Q6Z8K4`	Oryza sativa subsp. japonica	sp\|Q6Z8K4\|MUB3_ORYSJ Membrane-anchored ubiquitin-fold protein 3	57.100%	Swiss-Prot	High

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