LXL04_013186 | RubberDandelionOmics

Gene overview

LXL04_013186

Reference: OH-1004 Chr: Chr03 Coordinates: 25529456-25530318 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

357 bp · LXL04_013186|LXL04_013186|OH1004|cDNA

ATGCCGGAGGAAGATCTTTTAGAGCTCAAGTTTCGGTTGCTTGATGGATCGGATATTGGTCCGTTTCGATACTCTCCGGCTTCCACCGTCGCCATGCTTAAGGAACGAATTGTTGCCGAATGGCCCAAAGATAAAAAGGGCGGACCGAAAACAGCAAACGACATCAAATTAATAAACGCGGGGAAAATATTGGAAAACAACAAAACTGTTGGACAGTGTAGAACACCTTTTGGCGAGCTTCCAAAAGGGGTAATTACTAT...

CDS

Download CDS FASTA

357 bp · LXL04_013186|LXL04_013186|OH1004|CDS

ATGCCGGAGGAAGATCTTTTAGAGCTCAAGTTTCGGTTGCTTGATGGATCGGATATTGGTCCGTTTCGATACTCTCCGGCTTCCACCGTCGCCATGCTTAAGGAACGAATTGTTGCCGAATGGCCCAAAGATAAAAAGGGCGGACCGAAAACAGCAAACGACATCAAATTAATAAACGCGGGGAAAATATTGGAAAACAACAAAACTGTTGGACAGTGTAGAACACCTTTTGGCGAGCTTCCAAAAGGGGTAATTACTAT...

Protein

Download Protein FASTA

118 aa · LXL04_013186|LXL04_013186|OH1004|PROTEIN

MPEEDLLELKFRLLDGSDIGPFRYSPASTVAMLKERIVAEWPKDKKGGPKTANDIKLINAGKILENNKTVGQCRTPFGELPKGVITMHAVVQMSLTKTKTEKKIDEAPKTNICACTIL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_013186`
TK1151 ID	TkA02G513360
OH-1004 ID	LXL04_013186
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_013186

Location Chr03:25529456-25530318 (+)

Description Similar to MUB4: Membrane-anchored ubiquitin-fold protein 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g26980`	May serve as docking site to facilitate the association of other proteins to the plasma membrane.	No verified direct reference in this release
`At4g24990`	May serve as docking site to facilitate the association of other proteins to the plasma membrane.	No verified direct reference in this release
`At1g22050`	May serve as docking site to facilitate the association of other proteins to the plasma membrane.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0393300`	May serve as docking site to facilitate the association of other proteins to the plasma membrane.	No verified direct reference in this release
`Os02g0750600`	May serve as docking site to facilitate the association of other proteins to the plasma membrane.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_013186 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT1G22050

ath:AT3G26980

ath:AT4G24990

dosa:Os02g0750600

dosa:Os04g0393300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.725

Rank 1 · LXL04_013186 · OH-1004

Cytoplasm0.225

Rank 2 · LXL04_013186 · OH-1004

Nucleus0.112

Rank 3 · LXL04_013186 · OH-1004

Endoplasmic reticulum0.069

Rank 4 · LXL04_013186 · OH-1004

Golgi apparatus0.038

Rank 5 · LXL04_013186 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13881.13Rad60-SLD_25-116 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_013186	`PF13881.13`	Rad60-SLD_2	5	116	6e-44	149.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LSD8`	Arabidopsis thaliana	Membrane-anchored ubiquitin-fold protein 4	71.667%	Swiss-Prot	strong database homology
`Q9SW27`	Arabidopsis thaliana	Membrane-anchored ubiquitin-fold protein 3	67.797%	Swiss-Prot	strong database homology
`Q8GWJ6`	Arabidopsis thaliana	Membrane-anchored ubiquitin-fold protein 6	55.172%	Swiss-Prot	strong database homology
`Q7XRU4`	Oryza sativa subsp. japonica	Membrane-anchored ubiquitin-fold protein 4	63.636%	Swiss-Prot	strong database homology
`Q6Z8K4`	Oryza sativa subsp. japonica	Membrane-anchored ubiquitin-fold protein 3	57.143%	Swiss-Prot	strong database homology

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