TkA02G511160 | RubberDandelionOmics

Gene overview

TkA02G511160

Reference: TK1151 Chr: Chr02 Coordinates: 131252137-131256510 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3244 bp · TkA02G511160|TK1151|cDNA

AATATAACCAAATTTTCATATAAGTAATAATGTACACACTGACACCTCATCACCAAAACAACAAGCTGCAATACCACTTTCCGTGGCTACCAAAGCGAATTCCGAGCTTGGCAGTATCTCCATCTCATATTCTAATGTAACATCACTTTTCCTCACAGCCATCCATCTCACCCTCCATTTACTTAAACCAATTCCGGCGGTCCAAACAGATTTCCGAAGATTGTGGGATTCCACACCCACTCGTGACGCTAGCACACTCC...

CDS

Download CDS FASTA

1209 bp · TkA02G511160|TK1151|CDS

ATGCCAGGAATCAGATCACCATCTGACTATTCAGAAGAACCGAAACGACATCCTGCTCTCAAAATCAACGCTAAGGAGCCCTTCAATGCGGAACCAAGACGTCAGGATTTGGTTTCTTCTTATATCACCCCTACGGAATTCTTCTACAAGAGAAACCATGGACCAATACCTGTTGTGGATGATATAGAAAGATATTGCGTCTCTGTTAATGGGCTAATTAACAAACCCAAAGATCTGTTTATGAAAGATATCATGAACCT...

Protein

Download Protein FASTA

402 aa · TkA02G511160|TK1151|PROTEIN

MPGIRSPSDYSEEPKRHPALKINAKEPFNAEPRRQDLVSSYITPTEFFYKRNHGPIPVVDDIERYCVSVNGLINKPKDLFMKDIMNLPKYTVTATLQCAGNRRTAMSKTRTVRGVGWDVSALGNGSSQIPIFHSIWSGAKLADVLELVGIPKLTSTTPTGGKHVEFVSIDKCKEEKGGPYKASIPLSVATNPEADVLLAYEMNGETLNRDHGYPLRVVVPGVIGARSVKWLDSINIDSQVCQGFFMQKDYKMFPPTVNWD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G511160`
TK1151 ID	TkA02G511160
OH-1004 ID	LXL04_013215
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.300
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G511160

Location Chr02:131252137-131256510 (-)

Description Similar to SOX: Sulfite oxidase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g01910`	Probably involved in sulfite oxidative detoxification.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_013215 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006790 sulfur compound metabolic process Biological Process

GO:0007584 response to nutrient Biological Process

GO:0010477 response to sulfur dioxide Biological Process

GO:0015994 chlorophyll metabolic process Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005758 mitochondrial intermembrane space Cellular Component

GO:0005777 peroxisome Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0008482 sulfite oxidase activity Molecular Function

GO:0020037 heme binding Molecular Function

GO:0030151 molybdenum ion binding Molecular Function

KEGG gene cross-reference

ath:AT3G01910

mmu:211389

rno:81805

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.378

Rank 1 · TkA02G511160 · TK1151

Plastid0.212

Rank 2 · TkA02G511160 · TK1151

Peroxisome0.198

Rank 3 · TkA02G511160 · TK1151

Nucleus0.114

Rank 4 · TkA02G511160 · TK1151

Mitochondrion0.089

Rank 5 · TkA02G511160 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00174Oxidored_molyb53-244 aa

PF03404Mo-co_dimer269-397 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G511160	`PF00174`	Oxidored_molyb	53	244	1e-49	169.1
TkA02G511160	`PF03404`	Mo-co_dimer	269	397	1.3e-37	129.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9S850`	Arabidopsis thaliana	sp\|Q9S850\|SUOX_ARATH Sulfite oxidase	74.100%	Swiss-Prot	High

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