TkA02G508610 | RubberDandelionOmics

Gene overview

TkA02G508610

Reference: TK1151 Chr: Chr02 Coordinates: 130531778-130535529 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3420 bp · TkA02G508610|TK1151|cDNA

TATTTTTAAATTTTCTTTCTTTTCTTTTAGTTTTCTATTATTATTAAATATAAAAAGGCCCCACTTAACTACCAAAATATATATATCTCTCTCTCTCACATCAAAACTACCAGCTTTATCCTTTCTTGTTTCGTGTCTTGATGTGCTGAAAGCACAAGCAACAGAGACACAGAAATCAGAGTAGGTCGGTGAGACAAACGGAGGAGTAGGACAGCGATTTCCGGGTCGACGAGGGAAGAGGAGCAGCCACCTGGGTCGAC...

CDS

Download CDS FASTA

1842 bp · TkA02G508610|TK1151|CDS

ATGGATTCGATTATCAACGGAGTTGGTTCTTTGCCAACAAACCACAACTCTACCACCATGTTCCGTTCAAAAACCCGACCTCCTCATCCGCGCTCAGGAAAACAATCAAACCGCGAAAGATCTCCATCTTCATCTCATTTCTTACAAGATATTTCCTCAATGTCCGTTGCCAGTTCTTACAAAACCTCCAAGGATTACATCGAAAAAGAAGCCATACCATCCACCCACTCAAAACCTAATTCCGCACCCGAAAAACGCAA...

Protein

Download Protein FASTA

613 aa · TkA02G508610|TK1151|PROTEIN

MDSIINGVGSLPTNHNSTTMFRSKTRPPHPRSGKQSNRERSPSSSHFLQDISSMSVASSYKTSKDYIEKEAIPSTHSKPNSAPEKRKPDCQSARDYFRTQILEVEAKFGSKQPINPPFAMNTDRGPPHGPTASPQNSFYSVTQFSEAKESFTSTELSEFASSIGKGDESGQTSDYLESNKTSSIYRESTDSDDLSDDSTSSSFNSAIYKPHKQNDTRWEAIQIVRSRNETGMIEIRNFRHLKQLGCGDIGSVYLSELIGT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G508610`
TK1151 ID	TkA02G508610
OH-1004 ID	LXL04_013268
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G508610

Location Chr02:130531778-130535529 (+)

Description Similar to Protein kinase PVPK-1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g47750`	Protein kinase that regulates the auxin transport activity of PIN auxin efflux facilitators by direct phosphorylation.	D6PK AGCVIII kinases are required for auxin transport and phototropic hypocotyl bending in Arabidopsis.2013 · DOI: 10.1105/tpc.113.111484
`At3g27580`	Protein kinase that regulates the auxin transport activity of PIN auxin efflux facilitators by direct phosphorylation.	D6PK AGCVIII kinases are required for auxin transport and phototropic hypocotyl bending in Arabidopsis.2013 · DOI: 10.1105/tpc.113.111484

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0291600`	May play a role in the regulation of metabolism and signal transduction processes.	No verified direct reference in this release
`UniProt: A2YBX5`	May play a role in the regulation of metabolism and signal transduction processes.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_013268 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0009555 pollen development Biological Process

GO:0009638 phototropism Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0010540 basipetal auxin transport Biological Process

GO:0062075 pollen aperture formation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004672 protein kinase activity Molecular Function

KEGG gene cross-reference

ath:AT3G27580

ath:AT5G47750

dosa:Os06g0291600

osa:4340792

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.644

Rank 1 · TkA02G508610 · TK1151

Nucleus0.305

Rank 2 · TkA02G508610 · TK1151

Cell membrane0.152

Rank 3 · TkA02G508610 · TK1151

Mitochondrion0.054

Rank 4 · TkA02G508610 · TK1151

Golgi apparatus0.046

Rank 5 · TkA02G508610 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase239-393 aa

PF07714PK_Tyr_Ser-Thr241-388 aa

PF03109ABC1298-385 aa

PF01163RIO1309-382 aa

PF01163RIO1433-486 aa

PF00069Pkinase472-575 aa

PF07714PK_Tyr_Ser-Thr479-562 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G508610	`PF00069`	Pkinase	239	393	3e-58	198.0
TkA02G508610	`PF07714`	PK_Tyr_Ser-Thr	241	388	4e-28	99.2
TkA02G508610	`PF03109`	ABC1	298	385	0.0017	18.3
TkA02G508610	`PF01163`	RIO1	309	382	0.0047	17.3
TkA02G508610	`PF01163`	RIO1	433	486	0.0047	17.3
TkA02G508610	`PF00069`	Pkinase	472	575	3e-58	198.0
TkA02G508610	`PF07714`	PK_Tyr_Ser-Thr	479	562	4e-28	99.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q39183`	Arabidopsis thaliana	sp\|Q39183\|D6KL2_ARATH Serine/threonine-protein kinase D6PKL2	71.100%	Swiss-Prot	High
`Q05999`	Arabidopsis thaliana	sp\|Q05999\|D6KL3_ARATH Serine/threonine-protein kinase D6PKL3	64.500%	Swiss-Prot	High
`Q0DCT8`	Oryza sativa subsp. japonica	sp\|Q0DCT8\|G11A_ORYSJ Protein kinase G11A	66.400%	Swiss-Prot	High
`A2YBX5`	Oryza sativa subsp. indica	sp\|A2YBX5\|G11A_ORYSI Protein kinase G11A	66.400%	Swiss-Prot	High

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