TkA02G505940 | RubberDandelionOmics

Gene overview

TkA02G505940

Reference: TK1151 Chr: Chr02 Coordinates: 129811429-129817079 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2524 bp · TkA02G505940|TK1151|cDNA

GCTTATATATAGGCCATCTTGGTGTTGTTGTAAGTTGCCTCAAACTCATCATCCCATTCATGTCTTCTGCAAAATCTCGTCTTCTTTCACCACCAATCAAACACTTCATCCATGCCGACTTCCATGGAGTCTTTCAAAGGATGACACTCACCGACAAACTTCTCTTCTTGGTACGTATTCGCATGTGTGTTGTTTAACTTCTTGATTGATTCCAACATATATAGACACTTACTGGATCATGTCACACCTGATATTGGATA...

CDS

Download CDS FASTA

1905 bp · TkA02G505940|TK1151|CDS

ATGTATGCGGAGTTCAAGATTGTCTCTCCAAAAAAGAGATATGAGACTCCAACATATATGTACACGCATATCGGACCGTGTCGCACCGATATGAATGTTCACGGGGTTGACAAATCAAACATTGGATGGCATCGTCTGCCCGTGTTCTTGGGGCTGTCTTACTTGGCTATACGCCGGCGTCTTCATGACAAATACAATTTGCTCAACGTTGGGAAAACTTCTGTAGGATTTGGGTTCAATGCCGCCGACTTTCCGTTCAG...

Protein

Download Protein FASTA

634 aa · TkA02G505940|TK1151|PROTEIN

MYAEFKIVSPKKRYETPTYMYTHIGPCRTDMNVHGVDKSNIGWHRLPVFLGLSYLAIRRRLHDKYNLLNVGKTSVGFGFNAADFPFRSADGKYTDPSNEGVGGEGSFFGRNMPPVDQKDKLLKPDPMVVATKLLARRQFIDTGKQFNMIAASWIQFMIHDWIDHLESTQQIELKAPEEVAAQCPLKSFKFYKTKEFDTGLNDIKKGHHNNRTPWWDGSAIYGNNSRELWQVRTFKDGKLKITKDGLLEHDDNGLPLAGDI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G505940`
TK1151 ID	TkA02G505940
OH-1004 ID	LXL04_013310
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	77.400
Protein coverage (%)	TK1151 94.795 / OH-1004 93.478 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G505940

Location Chr02:129811429-129817079 (-)

Description Similar to DOX1: Alpha-dioxygenase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g01420`	Alpha-dioxygenase that catalyzes the primary oxygenation step of a variety of 14-20 carbon fatty acids, containing up to three unsaturated bonds, into their corresponding 2R-hydroperoxides.	alpha-oxidation of fatty acids in higher plants. Identification of a pathogen-inducible oxygenase (piox) as an alpha-dioxygenase and biosynthesis of 2-hydroperoxylinolenic acid.1999 · DOI: 10.1074/jbc.274.35.24503 Involvement of the Arabidopsis alpha-DOX1 fatty acid dioxygenase in protection against oxidative stress and cell death.2002 · DOI: 10.1046/j.1365-313x.2002.01195.x Role of 9-lipoxygenase and α-dioxygenase oxylipin pathways as modulators of local and systemic defense.2012 · DOI: 10.1093/mp/ssr105

Rice

Reference gene ID	Possible function	Papers / DOI
`Os12g0448900`	Alpha-dioxygenase that catalyzes the primary oxygenation step of a variety of 14-20 carbon fatty acids, containing up to three unsaturated bonds, into their corresponding 2R-hydroperoxides.	His-311 and Arg-559 are key residues involved in fatty acid oxygenation in pathogen-inducible oxygenase.2008 · DOI: 10.1074/jbc.m804358200

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013310 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0001561 fatty acid alpha-oxidation Biological Process

GO:0001676 long-chain fatty acid metabolic process Biological Process

GO:0006629 lipid metabolic process Biological Process

GO:0006633 fatty acid biosynthetic process Biological Process

GO:0006952 defense response Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0009627 systemic acquired resistance Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009751 response to salicylic acid Biological Process

GO:0031408 oxylipin biosynthetic process Biological Process

GO:0034614 cellular response to reactive oxygen species Biological Process

KEGG gene cross-reference

ag:CAH05011

ath:AT3G01420

osa:4352160

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.477

Rank 1 · TkA02G505940 · TK1151

Peroxisome0.199

Rank 2 · TkA02G505940 · TK1151

Mitochondrion0.168

Rank 3 · TkA02G505940 · TK1151

Nucleus0.138

Rank 4 · TkA02G505940 · TK1151

Cell membrane0.094

Rank 5 · TkA02G505940 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03098An_peroxidase86-602 aa

PF08283Gemini_AL1_M274-326 aa

PF08283Gemini_AL1_M571-610 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G505940	`PF03098`	An_peroxidase	86	602	1.4e-101	341.4
TkA02G505940	`PF08283`	Gemini_AL1_M	274	326	0.095	13.5
TkA02G505940	`PF08283`	Gemini_AL1_M	571	610	0.095	13.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SGH6`	Arabidopsis thaliana	sp\|Q9SGH6\|DOX1_ARATH Alpha-dioxygenase 1	69.300%	Swiss-Prot	High
`Q2QRV3`	Oryza sativa subsp. japonica	sp\|Q2QRV3\|PIOX_ORYSJ Alpha-dioxygenase PIOX	64.800%	Swiss-Prot	High

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