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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G505880
Reference: TK1151 Chr: Chr02 Coordinates: 129788911-129790269 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1269 bp · TkA02G505880|TK1151|cDNA

ATGAATCTTCTTGCCAGTGTGGCTGCTGGTGAGATTTCCAGGTCTGACGTGTCACCATCATCATGTTCCCCTGAAACTAAACCACCTGTACTTGAAAACACTCGGTCTGAAGATAACGGTAATTCTAGTCAGTCAATCGAAGATGGTTGTCAAAGTGAAGACACTCTTAAAGTCAGCAATGGTCATGCCCAGGTTAGCGGAAAACCGTCAGCCTCAGATAAACATGAGGATGAGAAGAAGTTAGAGCAGAAAGAGAAAGA...

CDS

Download CDS FASTA

1269 bp · TkA02G505880|TK1151|CDS

ATGAATCTTCTTGCCAGTGTGGCTGCTGGTGAGATTTCCAGGTCTGACGTGTCACCATCATCATGTTCCCCTGAAACTAAACCACCTGTACTTGAAAACACTCGGTCTGAAGATAACGGTAATTCTAGTCAGTCAATCGAAGATGGTTGTCAAAGTGAAGACACTCTTAAAGTCAGCAATGGTCATGCCCAGGTTAGCGGAAAACCGTCAGCCTCAGATAAACATGAGGATGAGAAGAAGTTAGAGCAGAAAGAGAAAGA...

Protein

Download Protein FASTA

422 aa · TkA02G505880|TK1151|PROTEIN

MNLLASVAAGEISRSDVSPSSCSPETKPPVLENTRSEDNGNSSQSIEDGCQSEDTLKVSNGHAQVSGKPSASDKHEDEKKLEQKEKDDKDSEMVTSSSGRASLDQKDKQCEEKANTNPNSSVLLQTIENEAQKVEVSAPPDSTSAHVSETTVKLDFDLNEIDPSDDYIEMPVIENRPTSVTVASAAKGPFLSSENLLKTKPELGWKGSAATSAFRPAEPRKPREFLDFDLNVGAVDDNPPSKYLDSRNSGGGGLDLDLNA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G505880
TK1151 IDTkA02G505880
OH-1004 IDLXL04_013316
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)91.400
Protein coverage (%)TK1151 89.810 / OH-1004 34.602
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G505880
LocationChr02:129788911-129790269 (+)
DescriptionSimilar to ppp1r10: Serine/threonine-protein phosphatase 1 regulatory subunit 10
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_013316 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0010220 positive regulation of vernalization response Biological Process
GO:0034244 negative regulation of transcription elongation by RNA polymerase II Biological Process
GO:0045814 negative regulation of gene expression, epigenetic Biological Process
GO:2000028 regulation of photoperiodism, flowering Biological Process
GO:0005634 nucleus Cellular Component
GO:0001217 DNA-binding transcription repressor activity Molecular Function
GO:0003682 chromatin binding Molecular Function
GO:0061628 histone H3K27me3 reader activity Molecular Function
GO:0140566 histone reader activity Molecular Function
KEGG gene cross-reference
bdi:100843157
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.835
Rank 1 · TkA02G505880 · TK1151
Cytoplasm0.203
Rank 2 · TkA02G505880 · TK1151
Cell membrane0.063
Rank 3 · TkA02G505880 · TK1151
Endoplasmic reticulum0.053
Rank 4 · TkA02G505880 · TK1151
Golgi apparatus0.019
Rank 5 · TkA02G505880 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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