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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G494750
Reference: TK1151 Chr: Chr02 Coordinates: 126657288-126666056 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1582 bp · TkA02G494750|TK1151|cDNA

GTTTTGCTTATACTTGTCACCATCAACACTTTGAGCATGTATATATAAACACCCTTAAACTTCAAACTCAATCCTGAACTTATTATTTCAACCAATGAAGCCCAATCCAATCGAGCTTCCAATTCCTACCACCAATGGAAACCTCCAGAAACCTCTCATCACCACCAATCACTTCGTCCTCCCTGTCGTAACTCTAGCGCTCCTAATCACCGTCCATCTCTACATCGGAAATTTCTCCGACCTCCGGTTACTCAACACCG...

CDS

Download CDS FASTA

2625 bp · TkA02G494750|TK1151|CDS

ATGGATTCAGTTATCGCTACTGTTAGCGGATACCATGGATCAGAGAGATTTAAGCTTATCAAGTTAATATCTCAATCTGGTGCAAGTTATGTTGGAGCAATGAATCAATCTACCACGCATTTGGTGTGTCGCAAATTTGAGGGGAAGAAATATGAACTTGCCAGGAAGTTTAAGATAATCGTGGTGAATCATCGATGGATTGAGGACTGTATAAAGCAAGGAAGGCGTATCTCTGAGCGTTCCTATACGAAGCACTGTGG...

Protein

Download Protein FASTA

874 aa · TkA02G494750|TK1151|PROTEIN

MDSVIATVSGYHGSERFKLIKLISQSGASYVGAMNQSTTHLVCRKFEGKKYELARKFKIIVVNHRWIEDCIKQGRRISERSYTKHCGLEVGPLLLEVPAVADEVRNLSGQRPTTSNFSKKPVIDIEDDESGDDDWKDSWLLKENLLPDASQNKNHSTKLKRKGTKRRLRQDGLLTDRYSLDESTSFDFRTTESDNLSCPSPSHRVNQRRKNTTISESSKGSRRLIHKNTSNELKSSSDSEETIHHHRNRSHNRQKRSIIL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G494750
TK1151 IDTkA02G494750
OH-1004 IDLXL04_013463
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)99.800
Protein coverage (%)TK1151 49.199 / OH-1004 99.537
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G494750
LocationChr02:126657288-126666056 (-)
DescriptionSimilar to TBL19: Protein trichome birefringence-like 19
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g15900 May act as a bridging protein that binds pectin and other cell wall polysaccharides. No verified direct reference in this release
At3g02440 May act as a bridging protein that binds pectin and other cell wall polysaccharides. No verified direct reference in this release
At5g15890 May act as a bridging protein that binds pectin and other cell wall polysaccharides. No verified direct reference in this release
At3g28150 Xyloglucan acetyltransferase that catalyzes the acetylation of fucosylated Gal residues on xyloglucan side chains.
O-acetylation of Arabidopsis hemicellulose xyloglucan requires AXY4 or AXY4L, proteins with a TBL and DUF231 domain.2011 · DOI: 10.1105/tpc.111.091728
Xyloglucan O-acetyltransferases from Arabidopsis thaliana and Populus trichocarpa catalyze acetylation of fucosylated galactose residues on xyloglucan side chains.2018 · DOI: 10.1007/s00425-018-2972-0
At4g02110 BRCT domain-containing protein At4g02110. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_013463 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000139 Golgi membrane Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
GO:0016413 O-acetyltransferase activity Molecular Function
GO:1990538 xylan O-acetyltransferase activity Molecular Function
KEGG gene cross-reference
ath:AT3G02440
ath:AT5G15890
ath:AT5G15900
pop:7454989
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.645
Rank 1 · TkA02G494750 · TK1151
Cytoplasm0.141
Rank 2 · TkA02G494750 · TK1151
Cell membrane0.118
Rank 3 · TkA02G494750 · TK1151
Endoplasmic reticulum0.105
Rank 4 · TkA02G494750 · TK1151
Golgi apparatus0.039
Rank 5 · TkA02G494750 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12738PTCB-BRCT5-66 aa
PF00533BRCT7-71 aa
PF16589BRCT_215-81 aa
PF14447Prok-RING_439-50 aa
PF14447Prok-RING_4193-207 aa
PF28318FANCB_C203-257 aa
PF25054PHD_pln221-237 aa
PF15227zf-C3HC4_4273-282 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G494750PF12738PTCB-BRCT5661.5e-2176.9
TkA02G494750PF00533BRCT7717.7e-1246.0
TkA02G494750PF16589BRCT_215812.5e-0525.2
TkA02G494750PF14447Prok-RING_439500.6210.7
TkA02G494750PF14447Prok-RING_41932070.6210.7
TkA02G494750PF28318FANCB_C2032570.810.5
TkA02G494750PF25054PHD_pln2212371.59.5
TkA02G494750PF15227zf-C3HC4_42732820.0008720.1
TkA02G494750PF05290Baculo_IE-13073630.03514.8
TkA02G494750PF13639zf-RING_23083545.6e-0936.8
TkA02G494750PF00097zf-C3HC43093534.1e-0833.7
TkA02G494750PF13445zf-RING_UBOX3093511.5e-0628.8
TkA02G494750PF24921RING_XB3-XBAT313093571.5e-0525.7
TkA02G494750PF13923zf-C3HC4_23093530.0001722.1
TkA02G494750PF14634zf-RING_53093540.0002121.9
TkA02G494750PF17123zf-RING_113093340.008916.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LFT0Arabidopsis thalianasp|Q9LFT0|TBL19_ARATH Protein trichome birefringence-like 1950.700%Swiss-ProtHigh
Q9M896Arabidopsis thalianasp|Q9M896|TBL20_ARATH Protein trichome birefringence-like 2048.600%Swiss-ProtMedium
Q9LFT1Arabidopsis thalianasp|Q9LFT1|TBL21_ARATH Protein trichome birefringence-like 2146.200%Swiss-ProtMedium
Q9LRS2Arabidopsis thalianasp|Q9LRS2|TBL22_ARATH xyloglucan O-acetyltransferase 240.200%Swiss-ProtMedium
O04251Arabidopsis thalianasp|O04251|Y4211_ARATH BRCT domain-containing protein At4g0211031.000%Swiss-ProtLow

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