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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G494050
Reference: TK1151 Chr: Chr02 Coordinates: 126465099-126467018 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1884 bp · TkA02G494050|TK1151|cDNA

TCTCCTTTTCATTTCTCCACTGACTTTGATCCAAGCCCAGCAACCATACATCAAGAAGTCCAACACAAACTGCCGCGTCAGAAATGCCTCAACCTCCGTTTCGGTTATACCTGTAATGGCGCCAATCGTACCTGCGAAGCTTACCTCACCTTCCGATCCCAACCCCCGTACAACACTGTTACTTCAATCTCCAATCTATTGAACGCAAACGCGACTCAGCTTTCTCAACTCAACTCGGTTTCTGAAACCGCTGCTTTTGG...

CDS

Download CDS FASTA

1884 bp · TkA02G494050|TK1151|CDS

TCTCCTTTTCATTTCTCCACTGACTTTGATCCAAGCCCAGCAACCATACATCAAGAAGTCCAACACAAACTGCCGCGTCAGAAATGCCTCAACCTCCGTTTCGGTTATACCTGTAATGGCGCCAATCGTACCTGCGAAGCTTACCTCACCTTCCGATCCCAACCCCCGTACAACACTGTTACTTCAATCTCCAATCTATTGAACGCAAACGCGACTCAGCTTTCTCAACTCAACTCGGTTTCTGAAACCGCTGCTTTTGG...

Protein

Download Protein FASTA

627 aa · TkA02G494050|TK1151|PROTEIN

SPFHFSTDFDPSPATIHQEVQHKLPRQKCLNLRFGYTCNGANRTCEAYLTFRSQPPYNTVTSISNLLNANATQLSQLNSVSETAAFGTGEMVLVPTRCSCLGQYYQANATYVIQAGDTPFMIANNTFEGLSTCHALQAERTDGTGDIFPGGRLTVPLRCACPTEKQADAGIRYLLSYLITWGESVSVISAKFGVGTGVTLEANQLSEQDSTIYPFTTLLVPLSDQPSRSQTIAPPPPPATSPPPSSPPPSPPTSAGNNKW...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G494050
TK1151 IDTkA02G494050
OH-1004 IDLXL04_013480
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.400
Protein coverage (%)TK1151 94.737 / OH-1004 93.231
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G494050
LocationChr02:126465099-126467018 (-)
DescriptionSimilar to LYK4: LysM domain receptor-like kinase 4
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g23770 Lysin motif (LysM) receptor kinase that functions as a cell surface receptor in chitin elicitor (chitooligosaccharides) signaling leading to innate immunity.
LYK4, a lysin motif receptor-like kinase, is important for chitin signaling and plant innate immunity in Arabidopsis.2012 · DOI: 10.1104/pp.112.201699
At2g33580 May recognize microbe-derived N-acetylglucosamine (NAG)-containing ligands. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os09g0511000 LysM domain receptor-like kinase 10. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_013480 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002237 response to molecule of bacterial origin Biological Process
GO:0006952 defense response Biological Process
GO:0009101 glycoprotein biosynthetic process Biological Process
GO:0009877 nodulation Biological Process
GO:0010200 response to chitin Biological Process
GO:0045087 innate immune response Biological Process
GO:0071219 cellular response to molecule of bacterial origin Biological Process
GO:0071323 cellular response to chitin Biological Process
GO:1900150 regulation of defense response to fungus Biological Process
GO:1902290 positive regulation of defense response to oomycetes Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005775 vacuolar lumen Cellular Component
KEGG gene cross-reference
ath:AT2G23770
ath:AT2G33580
ath:AT3G01840
dosa:Os09g0511000
mtr:11410973
osa:9270778
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.745
Rank 1 · TkA02G494050 · TK1151
Endoplasmic reticulum0.112
Rank 2 · TkA02G494050 · TK1151
Cytoplasm0.094
Rank 3 · TkA02G494050 · TK1151
Lysosome / Vacuole0.073
Rank 4 · TkA02G494050 · TK1151
Nucleus0.055
Rank 5 · TkA02G494050 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23446LysM1_NFP_LYK44-100 aa
PF23473LysM3_LYK4_558-83 aa
PF01476LysM59-81 aa
PF23472LysM2_CERK1_LYK3_4_5104-158 aa
PF23457LysM2_NFP104-137 aa
PF23473LysM3_LYK4_5110-157 aa
PF01476LysM111-129 aa
PF23446LysM1_NFP_LYK144-161 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G494050PF23446LysM1_NFP_LYK441002.7e-2280.1
TkA02G494050PF23473LysM3_LYK4_558835.1e-2381.6
TkA02G494050PF01476LysM59811.1e-0732.4
TkA02G494050PF23472LysM2_CERK1_LYK3_4_51041587.4e-2381.0
TkA02G494050PF23457LysM2_NFP1041370.0004421.0
TkA02G494050PF23473LysM3_LYK4_51101575.1e-2381.6
TkA02G494050PF01476LysM1111291.1e-0732.4
TkA02G494050PF23446LysM1_NFP_LYK1441612.7e-2280.1
TkA02G494050PF23473LysM3_LYK4_51732225.1e-2381.6
TkA02G494050PF23472LysM2_CERK1_LYK3_4_51772227.4e-2381.0
TkA02G494050PF01476LysM1822211.1e-0732.4
TkA02G494050PF23446LysM1_NFP_LYK1842222.7e-2280.1
TkA02G494050PF26362DUF80932913720.04214.6
TkA02G494050PF23473LysM3_LYK4_53143215.1e-2381.6
TkA02G494050PF01476LysM3143251.1e-0732.4
TkA02G494050PF00069Pkinase3616041.9e-34120.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O64825Arabidopsis thalianasp|O64825|LYK4_ARATH LysM domain receptor-like kinase 446.500%Swiss-ProtMedium
O22808Arabidopsis thalianasp|O22808|LYK5_ARATH Protein LYK540.700%Swiss-ProtMedium
D7UPN3Oryza sativa subsp. japonicasp|D7UPN3|RLK10_ORYSJ LysM domain receptor-like kinase 1031.800%Swiss-ProtMedium

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