TkA02G487100 | RubberDandelionOmics

Gene overview

TkA02G487100

Reference: TK1151 Chr: Chr02 Coordinates: 124598359-124599348 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

990 bp · TkA02G487100|TK1151|cDNA

ATGGAGCCGGAAGCTGCTACGGCTTTCTACATACCGTTTTACGCTGGACTTGCCGTCGGAAAATATCTCTTCACCGACAGTACTAACGAAGAGCGTGATTTTCATGCCGTGCAGTTAATAAAGTGGGTCCAGAATCAATCTTACTGGCGGAGATCCAACGGCTCTGATCATGTTCTAGTTCTGGGTCGGATCACGTGGGATTTCCGCCGGCTAACTGACCCGGAAAAACGGTGGGGATCCACGTTCTTAAATATGCCGGA...

CDS

Download CDS FASTA

990 bp · TkA02G487100|TK1151|CDS

ATGGAGCCGGAAGCTGCTACGGCTTTCTACATACCGTTTTACGCTGGACTTGCCGTCGGAAAATATCTCTTCACCGACAGTACTAACGAAGAGCGTGATTTTCATGCCGTGCAGTTAATAAAGTGGGTCCAGAATCAATCTTACTGGCGGAGATCCAACGGCTCTGATCATGTTCTAGTTCTGGGTCGGATCACGTGGGATTTCCGCCGGCTAACTGACCCGGAAAAACGGTGGGGATCCACGTTCTTAAATATGCCGGA...

Protein

Download Protein FASTA

329 aa · TkA02G487100|TK1151|PROTEIN

MEPEAATAFYIPFYAGLAVGKYLFTDSTNEERDFHAVQLIKWVQNQSYWRRSNGSDHVLVLGRITWDFRRLTDPEKRWGSTFLNMPEMQTVTRLTIERAPGDYQDVGIPYPTGFHPRSITDIQAWQSFVRTYNRTSLFTFVGAAREDVGDDIRGLLLQTCRNESVSGTCRVVDCAVTPCANGSSAIMESLLGSEFCLQPRGDSFTRRSVFDCMIAGAVPVLFWTRTMYDQYEWYLPEEPESYSVFIDHDDVSAGKKSIKG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G487100`
TK1151 ID	TkA02G487100
OH-1004 ID	LXL04_013578
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 69.118 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G487100

Location Chr02:124598359-124599348 (-)

Description Similar to XLT2: Xyloglucan galactosyltransferase XLT2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g62220`	Functions in xyloglucan synthesis by adding side chains to the xylosylated glucan backbone.	RNA-Seq analysis of developing nasturtium seeds (Tropaeolum majus): identification and characterization of an additional galactosyltransferase involved in xyloglucan biosynthesis.2012 · DOI: 10.1093/mp/sss032 Protein-protein interactions among xyloglucan-synthesizing enzymes and formation of Golgi-localized multiprotein complexes.2015 · DOI: 10.1093/pcp/pcu161
`At2g20370`	Involved in the attachment of the Gal residue on the third xylosyl unit within the XXXG core structure of xyloglucan, the principal glycan that interlaces the cellulose microfibrils in plant cell wall.	The MUR3 gene of Arabidopsis encodes a xyloglucan galactosyltransferase that is evolutionarily related to animal exostosins.2003 · DOI: 10.1105/tpc.009837 KATAMARI1/MURUS3 Is a novel golgi membrane protein that is required for endomembrane organization in Arabidopsis.2005 · DOI: 10.1105/tpc.105.031930 A bi-functional xyloglucan galactosyltransferase is an indispensable salt stress tolerance determinant in Arabidopsis.2013 · DOI: 10.1093/mp/sst062 Protein-protein interactions among xyloglucan-synthesizing enzymes and formation of Golgi-localized multiprotein complexes.2015 · DOI: 10.1093/pcp/pcu161
`At5g41250`	Functions in xyloglucan synthesis by adding side chains to the xylosylated glucan backbone.	No verified direct reference in this release
`At2g32750`	Functions in xyloglucan synthesis by adding side chains to the xylosylated glucan backbone.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0144800`	Involved in the attachment of the Gal residue on the third xylosyl unit within the XXXG core structure of xyloglucan, the principal glycan that interlaces the cellulose microfibrils in plant cell wall.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013578 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000271 polysaccharide biosynthetic process Biological Process

GO:0009101 glycoprotein biosynthetic process Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0009863 salicylic acid mediated signaling pathway Biological Process

GO:0009969 xyloglucan biosynthetic process Biological Process

GO:0010256 endomembrane system organization Biological Process

GO:0042353 fucose biosynthetic process Biological Process

GO:0042546 cell wall biogenesis Biological Process

GO:0048767 root hair elongation Biological Process

GO:0000138 Golgi trans cisterna Cellular Component

GO:0000139 Golgi membrane Cellular Component

GO:0005768 endosome Cellular Component

KEGG gene cross-reference

ath:AT1G63450

ath:AT2G20370

ath:AT5G62220

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.817

Rank 1 · TkA02G487100 · TK1151

Endoplasmic reticulum0.102

Rank 2 · TkA02G487100 · TK1151

Cell membrane0.048

Rank 3 · TkA02G487100 · TK1151

Nucleus0.041

Rank 4 · TkA02G487100 · TK1151

Cytoplasm0.039

Rank 5 · TkA02G487100 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03016Exostosin_GT472-256 aa

PF23334VWC2L_2nd160-181 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G487100	`PF03016`	Exostosin_GT47	2	256	3.7e-58	197.9
TkA02G487100	`PF23334`	VWC2L_2nd	160	181	0.26	11.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4K6F1`	Arabidopsis thaliana	sp\|F4K6F1\|GT18_ARATH Xyloglucan galactosyltransferase XLT2	58.700%	Swiss-Prot	High
`Q7XJ98`	Arabidopsis thaliana	sp\|Q7XJ98\|MUR3_ARATH Xyloglucan galactosyltransferase MUR3	41.700%	Swiss-Prot	Medium
`Q9FHD8`	Arabidopsis thaliana	sp\|Q9FHD8\|GT20_ARATH Probable xyloglucan galactosyltransferase GT20	38.800%	Swiss-Prot	Medium
`O48842`	Arabidopsis thaliana	sp\|O48842\|GT12_ARATH Probable xyloglucan galactosyltransferase GT12	40.300%	Swiss-Prot	Medium
`Q8H038`	Oryza sativa subsp. japonica	sp\|Q8H038\|KATAM_ORYSJ Xyloglucan galactosyltransferase KATAMARI1 homolog	42.700%	Swiss-Prot	Medium

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