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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G486590
Reference: TK1151 Chr: Chr02 Coordinates: 124399810-124403594 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3085 bp · TkA02G486590|TK1151|cDNA

TGAATTGTGAACTTATTAGCAAACCATGTGTTAGAAAAATATTAAAACTTTGTCAAAAATGGTAAGAAAAACAGCGGTCGAATGATGACGTGACAAAATAAAATCATAACGAAAATGAAATAAACAGCCAATCACAACGGGCAACAATCATCTGCTCAATAAGTTCAATTTCTTTCAGACGAGTATCAAGCAAAAGTCGGCCGATAGTTCTTCAGTTGATGTCTGGTCAATTGAAAACCTGATATTGAACGTTTCTTATT...

CDS

Download CDS FASTA

1422 bp · TkA02G486590|TK1151|CDS

ATGACAGACCCTGTGATTGTAGCTTCCGGACAGACATACGAGCGGGGGTATATCCGTAATTGGATCGAACTCGGTCTCAATATCTGCCCTAAAACAATGCAAACCCTCGTCCACAGTAATCTAATCCCTAATTACACGGTCAAAGCTTTGATCGCCAATTGGTGCGAATCCAACAATGTGAAGCTTCCAGAATCCGTGAGAATAAACATAAACCAACCTACCTCACCCAAATCCAACGGAATTCAAATCCATCAAGAAGA...

Protein

Download Protein FASTA

473 aa · TkA02G486590|TK1151|PROTEIN

MTDPVIVASGQTYERGYIRNWIELGLNICPKTMQTLVHSNLIPNYTVKALIANWCESNNVKLPESVRININQPTSPKSNGIQIHQEELLLLSIMSFIFRRSGKATTETNTRDESKNLDSAGPSSTGVADEVLPANDSSSSTPATSDVSGELAAEFRAAAPQHEVSPRFGNRARNQIWRRSSFGPRAVSSVTETRPDLTELETQVKKLVNDLTSASIDTVRTATGEIRLLARHNMDNRIVIANCGAIVLLIGLLRSPDQKI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G486590
TK1151 IDTkA02G486590
OH-1004 IDLXL04_013591
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)96.000
Protein coverage (%)TK1151 94.292 / OH-1004 60.162
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G486590
LocationChr02:124399810-124403594 (-)
DescriptionSimilar to PUB2: U-box domain-containing protein 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g23140 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At5g67340 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At3g54790 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At3g46510 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At3g54850 Functions as an E3 ubiquitin ligase with specific E2 ubiquitin-conjugating enzymes.
Structure and biochemical function of a prototypical Arabidopsis U-box domain.2004 · DOI: 10.1074/jbc.m405057200

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_013591 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007166 cell surface receptor signaling pathway Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0034614 cellular response to reactive oxygen species Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0048364 root development Biological Process
GO:0048658 anther wall tapetum development Biological Process
GO:0050777 negative regulation of immune response Biological Process
GO:1904821 chloroplast disassembly Biological Process
GO:2000028 regulation of photoperiodism, flowering Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
KEGG gene cross-reference
ath:AT2G23140
ath:AT3G46510
ath:AT3G54790
ath:AT5G67340
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.530
Rank 1 · TkA02G486590 · TK1151
Nucleus0.357
Rank 2 · TkA02G486590 · TK1151
Cell membrane0.169
Rank 3 · TkA02G486590 · TK1151
Golgi apparatus0.059
Rank 4 · TkA02G486590 · TK1151
Lysosome / Vacuole0.057
Rank 5 · TkA02G486590 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04564U-box1-58 aa
PF04826Arm_243-72 aa
PF05804KAP189-295 aa
PF19427Insc_C200-309 aa
PF30196WRM1_C200-254 aa
PF11698V-ATPase_H_C202-270 aa
PF24768ARM_ARMC5204-376 aa
PF25598ARM_PUB204-452 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G486590PF04564U-box1581.7e-1351.3
TkA02G486590PF04826Arm_243720.002618.0
TkA02G486590PF05804KAP1892950.05512.4
TkA02G486590PF19427Insc_C2003090.0002820.2
TkA02G486590PF30196WRM1_C2002540.0115.5
TkA02G486590PF11698V-ATPase_H_C2022700.1612.8
TkA02G486590PF24768ARM_ARMC52043763.1e-2176.7
TkA02G486590PF25598ARM_PUB2044525.3e-2176.0
TkA02G486590PF00514Arm2052246.6e-36121.9
TkA02G486590PF00514Arm2352726.6e-36121.9
TkA02G486590PF04826Arm_22363750.002618.0
TkA02G486590PF12717Cnd12403100.1512.8
TkA02G486590PF30196WRM1_C2462980.0115.5
TkA02G486590PF13646HEAT_22483500.001219.8
TkA02G486590PF05804KAP2634190.05512.4
TkA02G486590PF23628ARM_LIN_C2673130.07812.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O22193Arabidopsis thalianasp|O22193|PUB4_ARATH U-box domain-containing protein 454.900%Swiss-ProtHigh
Q5XEZ8Arabidopsis thalianasp|Q5XEZ8|PUB2_ARATH U-box domain-containing protein 252.500%Swiss-ProtHigh
Q8GWV5Arabidopsis thalianasp|Q8GWV5|PUB3_ARATH U-box domain-containing protein 343.400%Swiss-ProtMedium
Q9SNC6Arabidopsis thalianasp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 1331.400%Swiss-ProtMedium
Q8VZ40Arabidopsis thalianasp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 1429.100%Swiss-ProtLow

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