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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G483030
Reference: TK1151 Chr: Chr02 Coordinates: 123252438-123253763 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1326 bp · TkA02G483030|TK1151|cDNA

ATGCCTGTGTTTCCATCCAAGAGAGATGGAGTTAGTGGTCAGGTTCTAGATCTAGACACTGCCGTCAAAGATGGGGTTCTCGGTGGCGGTGGCGGAGTGGGATTCGGCGGCGGATTTGCCGAGAAATTAGATCTGAACAAGATGATTGAAGAATTGGATCTGCCGGAGGTTCCATCTGTCTTCATTTGCCCAATTTCACTCGAACCGATGGAAGACCCGGTCACTCTTTGCACCGGCCAAACCTACGAACGCTCCAACAT...

CDS

Download CDS FASTA

1326 bp · TkA02G483030|TK1151|CDS

ATGCCTGTGTTTCCATCCAAGAGAGATGGAGTTAGTGGTCAGGTTCTAGATCTAGACACTGCCGTCAAAGATGGGGTTCTCGGTGGCGGTGGCGGAGTGGGATTCGGCGGCGGATTTGCCGAGAAATTAGATCTGAACAAGATGATTGAAGAATTGGATCTGCCGGAGGTTCCATCTGTCTTCATTTGCCCAATTTCACTCGAACCGATGGAAGACCCGGTCACTCTTTGCACCGGCCAAACCTACGAACGCTCCAACAT...

Protein

Download Protein FASTA

441 aa · TkA02G483030|TK1151|PROTEIN

MPVFPSKRDGVSGQVLDLDTAVKDGVLGGGGGVGFGGGFAEKLDLNKMIEELDLPEVPSVFICPISLEPMEDPVTLCTGQTYERSNILRWFSMGHFTCPTTMQELWDDSVTPNKTLHQLIHSWFSQKYLQMKKKSEDVQGSASDILDNLKKVKGQARVQSLKELRRVVTNHATARKTVVEKGGVSLLSSLLGPYTSHAIGSEVVSILVNLTLDSYSKVNLMQPAKISLVVDMLNEGSIETKINCTKLIKTLMEEDDFQVE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G483030
TK1151 IDTkA02G483030
OH-1004 IDLXL04_013633
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G483030
LocationChr02:123252438-123253763 (-)
DescriptionSimilar to PUB30: U-box domain-containing protein 30
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g49810 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At5g65920 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At3g19380 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At5g64660 Functions as an E3 ubiquitin ligase. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os03g0232600 E3 ubiquitin ligase that may function as positive regulator of brassinosteroid (BR) signaling.
The U-box E3 ubiquitin ligase TUD1 functions with a heterotrimeric G α subunit to regulate Brassinosteroid-mediated growth in rice.2013 · DOI: 10.1371/journal.pgen.1003391
An E3 ubiquitin ligase, ERECT LEAF1, functions in brassinosteroid signaling of rice.2013 · DOI: 10.4161/psb.27117
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_013633 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009742 brassinosteroid mediated signaling pathway Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0071472 cellular response to salt stress Biological Process
GO:0098542 defense response to other organism Biological Process
GO:1900457 regulation of brassinosteroid mediated signaling pathway Biological Process
GO:1901001 negative regulation of response to salt stress Biological Process
GO:0005634 nucleus Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT3G19380
ath:AT3G49810
ath:AT5G64660
ath:AT5G65920
dosa:Os03g0232600
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.486
Rank 1 · TkA02G483030 · TK1151
Cytoplasm0.465
Rank 2 · TkA02G483030 · TK1151
Cell membrane0.084
Rank 3 · TkA02G483030 · TK1151
Golgi apparatus0.051
Rank 4 · TkA02G483030 · TK1151
Endoplasmic reticulum0.048
Rank 5 · TkA02G483030 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04564U-box57-127 aa
PF11789zf-Nse62-100 aa
PF15906zf-NOSIP62-90 aa
PF13445zf-RING_UBOX63-99 aa
PF19047HOOK_N86-153 aa
PF26193DUF8045100-143 aa
PF25598ARM_PUB144-440 aa
PF11841ELMO_ARM159-191 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G483030PF04564U-box571274.2e-1659.6
TkA02G483030PF11789zf-Nse621000.0004620.7
TkA02G483030PF15906zf-NOSIP62900.311.9
TkA02G483030PF13445zf-RING_UBOX63990.02415.3
TkA02G483030PF19047HOOK_N861530.113.1
TkA02G483030PF26193DUF80451001430.213.0
TkA02G483030PF25598ARM_PUB1444401.8e-85287.8
TkA02G483030PF11841ELMO_ARM1591910.05414.1
TkA02G483030PF11935SYMPK_PTA1_N1632760.04514.1
TkA02G483030PF24768ARM_ARMC51723834.5e-0627.0
TkA02G483030PF00514Arm1751971.59.7
TkA02G483030PF00514Arm1972121.59.7
TkA02G483030PF00514Arm2282451.59.7
TkA02G483030PF11841ELMO_ARM2362760.05414.1
TkA02G483030PF26193DUF80452472620.213.0
TkA02G483030PF00514Arm3083231.59.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q058P4Arabidopsis thalianasp|Q058P4|PUB30_ARATH U-box domain-containing protein 3071.200%Swiss-ProtHigh
Q9FHN9Arabidopsis thalianasp|Q9FHN9|PUB31_ARATH U-box domain-containing protein 3168.500%Swiss-ProtHigh
Q9LT79Arabidopsis thalianasp|Q9LT79|PUB25_ARATH U-box domain-containing protein 2529.600%Swiss-ProtLow
Q9FLF4Arabidopsis thalianasp|Q9FLF4|PUB27_ARATH U-box domain-containing protein 2729.600%Swiss-ProtLow
Q10PI9Oryza sativa subsp. japonicasp|Q10PI9|PUB75_ORYSJ U-box domain-containing protein 7558.100%Swiss-ProtHigh

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