TkA02G469440 | RubberDandelionOmics

Gene overview

TkA02G469440

Reference: TK1151 Chr: Chr02 Coordinates: 119756548-119757077 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

495 bp · TkA02G469440|TK1151|cDNA

ATGAGAGCAAAAGAGGCGCAGGCCTCGCCGTCTGTGAGGCAACATCCGCGTAACATTCAATCGTCTATTTCGGGACTTGAAAGTATGTTCCCACTTCCCCTTCCAGATTCACAGCAGCACTTGAATAATCAACCCATCGTCAATGACGAATACAACACCGGTGGGGCTCCTCCCGCGCTTATGTCTTCCTCCGGCAACCAGGAACAACAGCAGCAGCAGGACTCTCCGCCATCACAAGCGTCGCCAGCAACCGATCAAAA...

CDS

Download CDS FASTA

495 bp · TkA02G469440|TK1151|CDS

ATGAGAGCAAAAGAGGCGCAGGCCTCGCCGTCTGTGAGGCAACATCCGCGTAACATTCAATCGTCTATTTCGGGACTTGAAAGTATGTTCCCACTTCCCCTTCCAGATTCACAGCAGCACTTGAATAATCAACCCATCGTCAATGACGAATACAACACCGGTGGGGCTCCTCCCGCGCTTATGTCTTCCTCCGGCAACCAGGAACAACAGCAGCAGCAGGACTCTCCGCCATCACAAGCGTCGCCAGCAACCGATCAAAA...

Protein

Download Protein FASTA

164 aa · TkA02G469440|TK1151|PROTEIN

MRAKEAQASPSVRQHPRNIQSSISGLESMFPLPLPDSQQHLNNQPIVNDEYNTGGAPPALMSSSGNQEQQQQQDSPPSQASPATDQNAAYTCLRYSCNANKMLLEISEISTPYRTSAQQVAAYFSEAMSARLMSSCLGIYTTLPANIAIPQGLNRSEKTYLPSN

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G469440`
TK1151 ID	TkA02G469440
OH-1004 ID	LXL04_000119
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	59.500
Protein coverage (%)	TK1151 97.561 / OH-1004 26.923 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G469440

Location Chr02:119756548-119757077 (-)

Description Similar to SCR: Protein SCARECROW

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g54220`	Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2ZHL0`	Probable transcription factor involved in asmmetric cell division in the cortex/endodermis progenitor cell and in the process of stomata and ligule formation in leaves.	No verified direct reference in this release
`Os12g0122000`	Probable transcription factor involved in asmmetric cell division in the cortex/endodermis progenitor cell and in the process of stomata and ligule formation in leaves.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000119 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0008356 asymmetric cell division Biological Process

GO:0009610 response to symbiotic fungus Biological Process

GO:0009630 gravitropism Biological Process

GO:0009956 radial pattern formation Biological Process

GO:0045454 cell redox homeostasis Biological Process

GO:0048364 root development Biological Process

GO:0048366 leaf development Biological Process

GO:0051457 maintenance of protein location in nucleus Biological Process

GO:0090610 bundle sheath cell fate specification Biological Process

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT3G54220

dosa:Os11g0124300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.702

Rank 1 · TkA02G469440 · TK1151

Cytoplasm0.350

Rank 2 · TkA02G469440 · TK1151

Mitochondrion0.050

Rank 3 · TkA02G469440 · TK1151

Cell membrane0.038

Rank 4 · TkA02G469440 · TK1151

Endoplasmic reticulum0.025

Rank 5 · TkA02G469440 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03514GRAS97-145 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G469440	`PF03514`	GRAS	97	145	4.2e-08	33.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M384`	Arabidopsis thaliana	sp\|Q9M384\|SCR_ARATH Protein SCARECROW	78.700%	Swiss-Prot	Low
`A2ZHL0`	Oryza sativa subsp. indica	sp\|A2ZHL0\|SCR2_ORYSI Protein SCARECROW 2	66.000%	Swiss-Prot	Low
`Q2QYF3`	Oryza sativa subsp. japonica	sp\|Q2QYF3\|SCR2_ORYSJ Protein SCARECROW 2	66.000%	Swiss-Prot	Low

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