TkA02G458750 | RubberDandelionOmics

Gene overview

TkA02G458750

Reference: TK1151 Chr: Chr02 Coordinates: 116863423-116864414 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

552 bp · TkA02G458750|TK1151|cDNA

ATGCTGTCGCTCGCCGGAACTCGCTGCTTAGCGCTGGAGAAGAAGGTAGAAGGTGGAGTACTAACCGGTACAAAGGAAGGAGATCAAACAACCACCCTCGGTGGTCGCCGACAGCAGATGACGAAGAACACGAGGGCTGCCAGTGGGGGCTCTCTTCGGCAGCGGCTTTGGACGCAAGGAACGGCGCCGGAGAAGCCTGGAACTGACCACCGGAGCTGTACCCAAGCTTTTAAATTGGAACTTCCGCAAGAATTACAAGG...

CDS

Download CDS FASTA

552 bp · TkA02G458750|TK1151|CDS

ATGCTGTCGCTCGCCGGAACTCGCTGCTTAGCGCTGGAGAAGAAGGTAGAAGGTGGAGTACTAACCGGTACAAAGGAAGGAGATCAAACAACCACCCTCGGTGGTCGCCGACAGCAGATGACGAAGAACACGAGGGCTGCCAGTGGGGGCTCTCTTCGGCAGCGGCTTTGGACGCAAGGAACGGCGCCGGAGAAGCCTGGAACTGACCACCGGAGCTGTACCCAAGCTTTTAAATTGGAACTTCCGCAAGAATTACAAGG...

Protein

Download Protein FASTA

183 aa · TkA02G458750|TK1151|PROTEIN

MLSLAGTRCLALEKKVEGGVLTGTKEGDQTTTLGGRRQQMTKNTRAASGGSLRQRLWTQGTAPEKPGTDHRSCTQAFKLELPQELQGIHDTFHVSYLKRYCAKEELMIPLQDLKIDEKKRLVEEPEAILESTTKKLRNKEIELVLVRWKHALGPNLTWETKEEMMKRYPAFVDYDAIPRTESS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G458750`
TK1151 ID	TkA02G458750
OH-1004 ID	LXL04_024405
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	95.500
Protein coverage (%)	TK1151 60.109 / OH-1004 6.410 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA02G458750`
Location	Chr02:116863423-116864414 (+)
Description	Similar to Tf2-8: Transposon Tf2-8 polyprotein (Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_024405` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006310 DNA recombination Biological Process GO:0006508 proteolysis Biological Process GO:0015074 DNA integration Biological Process GO:0005634 nucleus Cellular Component GO:0003677 DNA binding Molecular Function GO:0003723 RNA binding Molecular Function GO:0003887 DNA-directed DNA polymerase activity Molecular Function GO:0003964 RNA-directed DNA polymerase activity Molecular Function GO:0004190 aspartic-type endopeptidase activity Molecular Function GO:0004519 endonuclease activity Molecular Function GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference	spo:2542763 spo:2542903 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.489

Rank 1 · TkA02G458750 · TK1151

Cytoplasm0.288

Rank 2 · TkA02G458750 · TK1151

Mitochondrion0.149

Rank 3 · TkA02G458750 · TK1151

Extracellular0.059

Rank 4 · TkA02G458750 · TK1151

Cell membrane0.035

Rank 5 · TkA02G458750 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24626SH3_Tf2-174-100 aa

PF00385Chromo124-173 aa

PF24626SH3_Tf2-1132-140 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G458750	`PF24626`	SH3_Tf2-1	74	100	1.2e-07	32.4
TkA02G458750	`PF00385`	Chromo	124	173	0.00087	19.9
TkA02G458750	`PF24626`	SH3_Tf2-1	132	140	1.2e-07	32.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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