LXL04_024405 | RubberDandelionOmics

Gene overview

LXL04_024405

Reference: OH-1004 Chr: Chr05 Coordinates: 89740875-89748553 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

5151 bp · LXL04_024405|LXL04_024405|OH1004|cDNA

ATGTTTTCATCATCGGATATTGCACATGACTTAACTTGGCATGCCGAAGGTCAAGTCAATAATGGACCAAAACAACCTGGTAACAATATTGATGTCTACTTGGCACCATTGATAGAAGATCTAAAACTCTTGTGGGAAACTGGGGTTAGAACATATGATGCTTATAAGAAAGAATACTTCAATCTAAGAGCAATATTGCTTTGGACTATAAATGACTTTCCCGCGTATAGTAATCTTTCGGGGTGTGTTACCAAAGGTTA...

CDS

Download CDS FASTA

5151 bp · LXL04_024405|LXL04_024405|OH1004|CDS

ATGTTTTCATCATCGGATATTGCACATGACTTAACTTGGCATGCCGAAGGTCAAGTCAATAATGGACCAAAACAACCTGGTAACAATATTGATGTCTACTTGGCACCATTGATAGAAGATCTAAAACTCTTGTGGGAAACTGGGGTTAGAACATATGATGCTTATAAGAAAGAATACTTCAATCTAAGAGCAATATTGCTTTGGACTATAAATGACTTTCCCGCGTATAGTAATCTTTCGGGGTGTGTTACCAAAGGTTA...

Protein

Download Protein FASTA

1716 aa · LXL04_024405|LXL04_024405|OH1004|PROTEIN

MFSSSDIAHDLTWHAEGQVNNGPKQPGNNIDVYLAPLIEDLKLLWETGVRTYDAYKKEYFNLRAILLWTINDFPAYSNLSGCVTKGYYACPICAKNTCSQWLPASKKVCFLGHRRFLPLKHPFRKRKKDFNNQQENDHIEQPLSGEEIYETLAGFKTTWGQKLKTSKKLKTSKKLKKSKKLKTSKKEPPKKISPKKEKESIDERAKLWHKKSIFFELEYWKKLLVRHQLDVMHIEKNVCESVYGTLLNLPNKTKDGIKAR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_024405`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`LXL04_024405`
Location	Chr05:89740875-89748553 (+)
Description	Similar to Tf2-8: Transposon Tf2-8 polyprotein (Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_024405` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006310 DNA recombination Biological Process GO:0006508 proteolysis Biological Process GO:0015074 DNA integration Biological Process GO:0005634 nucleus Cellular Component GO:0003677 DNA binding Molecular Function GO:0003723 RNA binding Molecular Function GO:0003887 DNA-directed DNA polymerase activity Molecular Function GO:0003964 RNA-directed DNA polymerase activity Molecular Function GO:0004190 aspartic-type endopeptidase activity Molecular Function GO:0004519 endonuclease activity Molecular Function GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference	spo:2542763 spo:2542903 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.935

Rank 1 · LXL04_024405 · OH-1004

Cytoplasm0.124

Rank 2 · LXL04_024405 · OH-1004

Mitochondrion0.019

Rank 3 · LXL04_024405 · OH-1004

Cell membrane0.018

Rank 4 · LXL04_024405 · OH-1004

Extracellular0.014

Rank 5 · LXL04_024405 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02992.21Transposase_2121-152 aa

PF13960.12DUF4218338-450 aa

PF13952.12DUF4216614-678 aa

PF31073.1DUF88031566-1634 aa

PF24626.2SH3_Tf2-11569-1633 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_024405	`PF02992.21`	Transposase_21	21	152	6e-53	179.9
LXL04_024405	`PF13960.12`	DUF4218	338	450	6.7e-44	149.1
LXL04_024405	`PF13952.12`	DUF4216	614	678	5e-18	66.1
LXL04_024405	`PF31073.1`	DUF8803	1566	1634	8.2e-08	32.7
LXL04_024405	`PF24626.2`	SH3_Tf2-1	1569	1633	4.5e-22	78.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser

Gene Card