RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G458140
Reference: TK1151 Chr: Chr02 Coordinates: 116727679-116734683 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2406 bp · TkA02G458140|TK1151|cDNA

ATAGGCTATGTTTTAAAAACCAACTATATTTATAATATTAAAAAAAATTACATACAAACTCGGTGCCATGTTACTTTTTTGACCACAAGATCCGGGTTTCCCCTCGATCTCTTCTTTTCTTTTCATCTTTTTCAGAATTACCTCCAGCTTACGGCGGTGACGGTGGATGATGTCTCTCTTGATGGCGTTTCTTGTGTTCTTTCTAATTAAACCAGGAGAATCACAGACAAACATTAGCGACAACAATATTAACACACCAA...

CDS

Download CDS FASTA

1998 bp · TkA02G458140|TK1151|CDS

ATGATGTCTCTCTTGATGGCGTTTCTTGTGTTCTTTCTAATTAAACCAGGAGAATCACAGACAAACATTAGCGACAACAATATTAACACACCAATCAGATCATTCTGTGGTCGTAACCCTCCTATAATTCTATCAAACTTTATCCAAAACCGTAATTCTACACTGGGTGAGATCAGAAGACAACTATCGAGCAACGGTGTATTTTATGCCACAGCACAGAGTTTGGCGGAAGGAGACTCGGTTTTTGGAGCTGCCCTTTG...

Protein

Download Protein FASTA

665 aa · TkA02G458140|TK1151|PROTEIN

MMSLLMAFLVFFLIKPGESQTNISDNNINTPIRSFCGRNPPIILSNFIQNRNSTLGEIRRQLSSNGVFYATAQSLAEGDSVFGAALCRNYLTIAQCVACFDVGVSQLISCVTGNGAYVFLDNCFLRYENYNNFYTDPNVVEDVGIAPLQLCGNQSASESTSFTQAVDGLLSDIKDATPKTSNFYVASTTQITNGNGTVYAIAQCVENTTQTICRNCINAAYRDLSNCLPSTEGRSIYMGCFARYSETPFFSDNQTIDITN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G458140
TK1151 IDTkA02G458140
OH-1004 IDLXL04_013986
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G458140
LocationChr02:116727679-116734683 (+)
DescriptionSimilar to CRK2: Cysteine-rich receptor-like protein kinase 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g70520 Cysteine-rich receptor-like protein kinase 2. No verified direct reference in this release
At5g40380 Cysteine-rich receptor-like protein kinase 42. No verified direct reference in this release
At4g23230 Cysteine-rich receptor-like protein kinase 15. No verified direct reference in this release
At1g19090 Cysteine-rich receptor-like protein kinase 1. No verified direct reference in this release
At4g11490 Putative cysteine-rich receptor-like protein kinase 33. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_013986 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006468 protein phosphorylation Biological Process
GO:0006979 response to oxidative stress Biological Process
GO:0007165 signal transduction Biological Process
GO:0009626 plant-type hypersensitive response Biological Process
GO:0010193 response to ozone Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0046777 protein autophosphorylation Biological Process
GO:0052545 callose localization Biological Process
GO:0072593 reactive oxygen species metabolic process Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005829 cytosol Cellular Component
KEGG gene cross-reference
ath:AT1G19090
ath:AT1G70520
ath:AT1G70530
ath:AT4G23230
ath:AT5G40380
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.879
Rank 1 · TkA02G458140 · TK1151
Endoplasmic reticulum0.073
Rank 2 · TkA02G458140 · TK1151
Cytoplasm0.072
Rank 3 · TkA02G458140 · TK1151
Nucleus0.038
Rank 4 · TkA02G458140 · TK1151
Lysosome / Vacuole0.025
Rank 5 · TkA02G458140 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01034Syndecan4-13 aa
PF01657Stress-antifung45-130 aa
PF15330SIT58-78 aa
PF02207zf-UBR76-102 aa
PF01657Stress-antifung151-246 aa
PF02207zf-UBR193-219 aa
PF04478Mid2258-318 aa
PF01034Syndecan272-298 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G458140PF01034Syndecan4131.010.1
TkA02G458140PF01657Stress-antifung451301e-2694.2
TkA02G458140PF15330SIT58780.1213.6
TkA02G458140PF02207zf-UBR761026.07.7
TkA02G458140PF01657Stress-antifung1512461e-2694.2
TkA02G458140PF02207zf-UBR1932196.07.7
TkA02G458140PF04478Mid22583180.08113.4
TkA02G458140PF01034Syndecan2722981.010.1
TkA02G458140PF15330SIT2753080.1213.6
TkA02G458140PF00069Pkinase3275941.8e-47162.7
TkA02G458140PF12330Haspin_kinase3283690.05213.3
TkA02G458140PF07714PK_Tyr_Ser-Thr3295961.6e-47162.7
TkA02G458140PF03109ABC13313700.0214.7
TkA02G458140PF14894Lsm_C3443550.004617.4
TkA02G458140PF01034Syndecan3543681.010.1
TkA02G458140PF12330Haspin_kinase4214760.05213.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9CAL3Arabidopsis thalianasp|Q9CAL3|CRK2_ARATH Cysteine-rich receptor-like protein kinase 237.700%Swiss-ProtMedium
Q9FNE1Arabidopsis thalianasp|Q9FNE1|CRK42_ARATH Cysteine-rich receptor-like protein kinase 4235.500%Swiss-ProtMedium
Q8W4G6Arabidopsis thalianasp|Q8W4G6|CRK15_ARATH Cysteine-rich receptor-like protein kinase 1532.700%Swiss-ProtMedium
Q9LMB9Arabidopsis thalianasp|Q9LMB9|CRK1_ARATH Cysteine-rich receptor-like protein kinase 136.200%Swiss-ProtMedium
Q9LDN1Arabidopsis thalianasp|Q9LDN1|CRK33_ARATH Putative cysteine-rich receptor-like protein kinase 3333.500%Swiss-ProtMedium

JBrowse

View in Genome Browser