TkA02G457040 | RubberDandelionOmics

Gene overview

TkA02G457040

Reference: TK1151 Chr: Chr02 Coordinates: 116404379-116405347 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

969 bp · TkA02G457040|TK1151|cDNA

ATGTTCCTCTCCTCGCAGGTCCAGAGCAAGAACCCTGCGCCGCCGTTCAATTTGAGCTCCAGGTCACCGTTCAGGTATTCAATGGCCCTGGTTGTTTCCCTCCCCATAGGAACCCCACCTCAGGCTCAGCAGATGGTGCTGGACACCGGCAGCCAGCTGTCCTGGATTCAGTGCCACCGGAAAGCCCCCCGGAAGCCTCCTCCGACGTCGTTTGACCCCTCTCTCTCCTCCTCCTTCTCTCTTCTTCCCTGCAACCACCC...

CDS

Download CDS FASTA

969 bp · TkA02G457040|TK1151|CDS

ATGTTCCTCTCCTCGCAGGTCCAGAGCAAGAACCCTGCGCCGCCGTTCAATTTGAGCTCCAGGTCACCGTTCAGGTATTCAATGGCCCTGGTTGTTTCCCTCCCCATAGGAACCCCACCTCAGGCTCAGCAGATGGTGCTGGACACCGGCAGCCAGCTGTCCTGGATTCAGTGCCACCGGAAAGCCCCCCGGAAGCCTCCTCCGACGTCGTTTGACCCCTCTCTCTCCTCCTCCTTCTCTCTTCTTCCCTGCAACCACCC...

Protein

Download Protein FASTA

322 aa · TkA02G457040|TK1151|PROTEIN

MFLSSQVQSKNPAPPFNLSSRSPFRYSMALVVSLPIGTPPQAQQMVLDTGSQLSWIQCHRKAPRKPPPTSFDPSLSSSFSLLPCNHPICKPRIPDFTLPTTCDQNRLCHYSYFYADGTLAEGNLVRERFTFSRSRTTPPLTLGCAVDSSDAEGILGMNLGRLSFVSQAKVPRFSYCVPVRQAHDKINSTGTFYLGPNPHSRTFRYIDLLTFPKSQRSPNFDPLAYTVGLVGIKIGGKKLNISAAAFRPDAGGSGQTMIDS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G457040`
TK1151 ID	TkA02G457040
OH-1004 ID	LXL04_014068
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	74.400
Protein coverage (%)	TK1151 93.478 / OH-1004 68.276 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G457040

Location Chr02:116404379-116405347 (+)

Description Similar to PCS1: Aspartic proteinase PCS1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g02190`	Embryo-specific aspartic protease that limits programmed cell death during reproductive development.	No verified direct reference in this release
`At1g01300`	Aspartyl protease.	No verified direct reference in this release
`At3g18490`	Aspartic protease involved in drought avoidance through abscisic acid signaling.	Overexpression of the aspartic protease ASPG1 gene confers drought avoidance in Arabidopsis.2012 · DOI: 10.1093/jxb/err433
`At3g12700`	Aspartic proteinase that can use azocasein as substrate and regulates endogenous sugar levels (e.g. sucrose, glucose and fructose) by modulating starch accumulation and remobilization.	Misexpression of a chloroplast aspartyl protease leads to severe growth defects and alters carbohydrate metabolism in Arabidopsis.2012 · DOI: 10.1104/pp.112.204016
`At3g20015`	Aspartic protease that may be involved in drought avoidance through abscisic acid signaling.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014068 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005975 carbohydrate metabolic process Biological Process

GO:0006508 proteolysis Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009744 response to sucrose Biological Process

GO:0010019 chloroplast-nucleus signaling pathway Biological Process

GO:0012501 programmed cell death Biological Process

GO:0043067 regulation of programmed cell death Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004190 aspartic-type endopeptidase activity Molecular Function

KEGG gene cross-reference

ath:AT3G12700

ath:AT5G02190

dosa:Os03g0186900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.670

Rank 1 · TkA02G457040 · TK1151

Endoplasmic reticulum0.110

Rank 2 · TkA02G457040 · TK1151

Cell membrane0.087

Rank 3 · TkA02G457040 · TK1151

Cytoplasm0.072

Rank 4 · TkA02G457040 · TK1151

Lysosome / Vacuole0.030

Rank 5 · TkA02G457040 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14543TAXi_N31-195 aa

PF00026Asp34-80 aa

PF00026Asp151-278 aa

PF14541TAXi_C224-311 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G457040	`PF14543`	TAXi_N	31	195	1.8e-33	116.9
TkA02G457040	`PF00026`	Asp	34	80	8.6e-07	29.4
TkA02G457040	`PF00026`	Asp	151	278	8.6e-07	29.4
TkA02G457040	`PF14541`	TAXi_C	224	311	7.3e-18	65.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LZL3`	Arabidopsis thaliana	sp\|Q9LZL3\|PCS1L_ARATH Aspartic proteinase PCS1	39.500%	Swiss-Prot	Medium
`Q9LNJ3`	Arabidopsis thaliana	sp\|Q9LNJ3\|APF2_ARATH Aspartyl protease family protein 2	34.400%	Swiss-Prot	Medium
`Q9LS40`	Arabidopsis thaliana	sp\|Q9LS40\|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1	30.800%	Swiss-Prot	Medium
`Q9LTW4`	Arabidopsis thaliana	sp\|Q9LTW4\|NANA_ARATH Aspartic proteinase NANA, chloroplast	30.700%	Swiss-Prot	Medium
`Q9LHE3`	Arabidopsis thaliana	sp\|Q9LHE3\|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2	30.700%	Swiss-Prot	Medium

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