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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G456430
Reference: TK1151 Chr: Chr02 Coordinates: 116215887-116216249 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

363 bp · TkA02G456430|TK1151|cDNA

ATGGAAACTTGGAAAAGATCAGGTGTCATAAACTGCAATGATACTGTAAACGATAATTCTACCAGTACACCTTCTAGAAGCAGTCCATCTGAGTCAGCAACGTGTTCTACTAGCAACAACTTAAATGAATTAATAGATACAGATATTGAGATTTCTGAAAGTGTTCACCTTTTAGAAGCTCAAAGATACAAATTTAGACCTCTTTCAGTTGATTGCTTCTCCATTTTATCATATACAAAGGTGAATTATCTTTCCCTGAA...

CDS

Download CDS FASTA

363 bp · TkA02G456430|TK1151|CDS

ATGGAAACTTGGAAAAGATCAGGTGTCATAAACTGCAATGATACTGTAAACGATAATTCTACCAGTACACCTTCTAGAAGCAGTCCATCTGAGTCAGCAACGTGTTCTACTAGCAACAACTTAAATGAATTAATAGATACAGATATTGAGATTTCTGAAAGTGTTCACCTTTTAGAAGCTCAAAGATACAAATTTAGACCTCTTTCAGTTGATTGCTTCTCCATTTTATCATATACAAAGGTGAATTATCTTTCCCTGAA...

Protein

Download Protein FASTA

120 aa · TkA02G456430|TK1151|PROTEIN

METWKRSGVINCNDTVNDNSTSTPSRSSPSESATCSTSNNLNELIDTDIEISESVHLLEAQRYKFRPLSVDCFSILSYTKVNYLSLNIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYNNY

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G456430
TK1151 IDTkA02G456430
OH-1004 IDLXL04_014095
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 66.667 / OH-1004 5.384
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G456430
LocationChr02:116215887-116216249 (+)
DescriptionSimilar to Fancd2: Fanconi anemia group D2 protein homolog
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014095 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006974 DNA damage response Biological Process
GO:0007129 homologous chromosome pairing at meiosis Biological Process
GO:0007276 gamete generation Biological Process
GO:0010332 response to gamma radiation Biological Process
GO:0031573 mitotic intra-S DNA damage checkpoint signaling Biological Process
GO:0034599 cellular response to oxidative stress Biological Process
GO:0036297 interstrand cross-link repair Biological Process
GO:0097150 neuronal stem cell population maintenance Biological Process
GO:1990918 double-strand break repair involved in meiotic recombination Biological Process
GO:2000348 regulation of CD40 signaling pathway Biological Process
GO:0000785 chromatin Cellular Component
GO:0000793 condensed chromosome Cellular Component
KEGG gene cross-reference
hsa:2177
mmu:211651
rno:312641
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.445
Rank 1 · TkA02G456430 · TK1151
Cytoplasm0.402
Rank 2 · TkA02G456430 · TK1151
Lysosome / Vacuole0.080
Rank 3 · TkA02G456430 · TK1151
Cell membrane0.077
Rank 4 · TkA02G456430 · TK1151
Mitochondrion0.076
Rank 5 · TkA02G456430 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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