TkA02G456420 | RubberDandelionOmics

Gene overview

TkA02G456420

Reference: TK1151 Chr: Chr02 Coordinates: 116213412-116214566 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

741 bp · TkA02G456420|TK1151|cDNA

ATGCAAAAAAGTGTTGAAAAGCTACTAAAGAAGAAAATCATTGAAGGGTCTATTCAGGATGTTTTATTTGAGCAATGCATTTTTGGTAACAAGGAATTGGTAAAGGATCACTTTTCTTCATTCTTGCTGCTATCAGAATACTTATTGGCCTGCAAAGAGCAGAAAGCAAGCAAATTTGGCATTCAGATGTATAAGTACCTATTCGAGGGGTTTCCTGATACTTACTCAAGACAAGAAGTGTTAGGGGCATTGGTCACCCA...

CDS

Download CDS FASTA

741 bp · TkA02G456420|TK1151|CDS

ATGCAAAAAAGTGTTGAAAAGCTACTAAAGAAGAAAATCATTGAAGGGTCTATTCAGGATGTTTTATTTGAGCAATGCATTTTTGGTAACAAGGAATTGGTAAAGGATCACTTTTCTTCATTCTTGCTGCTATCAGAATACTTATTGGCCTGCAAAGAGCAGAAAGCAAGCAAATTTGGCATTCAGATGTATAAGTACCTATTCGAGGGGTTTCCTGATACTTACTCAAGACAAGAAGTGTTAGGGGCATTGGTCACCCA...

Protein

Download Protein FASTA

246 aa · TkA02G456420|TK1151|PROTEIN

MQKSVEKLLKKKIIEGSIQDVLFEQCIFGNKELVKDHFSSFLLLSEYLLACKEQKASKFGIQMYKYLFEGFPDTYSRQEVLGALVTHVGSGIVCEVNSALEAMVLLASKYSQELIPICSYITGILDYMEGFTTENLHKVYDVFCFLSRSAWSTQSSSESFGSSISNELFMIVRKQVSNPEFKYKKMGLIGTLKILSHLGDTNEEALELLKTSLDSCQQLPISLVLFYDELSAILDSRTLHPAIMER

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G456420`
TK1151 ID	TkA02G456420
OH-1004 ID	LXL04_014095
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 16.555 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA02G456420`
Location	Chr02:116213412-116214566 (+)
Description	Similar to Fancd2: Fanconi anemia group D2 protein homolog
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_014095` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006974 DNA damage response Biological Process GO:0007129 homologous chromosome pairing at meiosis Biological Process GO:0007276 gamete generation Biological Process GO:0010332 response to gamma radiation Biological Process GO:0031573 mitotic intra-S DNA damage checkpoint signaling Biological Process GO:0034599 cellular response to oxidative stress Biological Process GO:0036297 interstrand cross-link repair Biological Process GO:0097150 neuronal stem cell population maintenance Biological Process GO:1990918 double-strand break repair involved in meiotic recombination Biological Process GO:2000348 regulation of CD40 signaling pathway Biological Process GO:0000785 chromatin Cellular Component GO:0000793 condensed chromosome Cellular Component
KEGG gene cross-reference	hsa:2177 mmu:211651 rno:312641 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.482

Rank 1 · TkA02G456420 · TK1151

Cytoplasm0.459

Rank 2 · TkA02G456420 · TK1151

Golgi apparatus0.092

Rank 3 · TkA02G456420 · TK1151

Lysosome / Vacuole0.082

Rank 4 · TkA02G456420 · TK1151

Cell membrane0.077

Rank 5 · TkA02G456420 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14631FancD22-241 aa

PF14676FANCI_S252-190 aa

PF11264ThylakoidFormat61-91 aa

PF11264ThylakoidFormat165-209 aa

PF14676FANCI_S2216-235 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G456420	`PF14631`	FancD2	2	241	1.3e-43	149.6
TkA02G456420	`PF14676`	FANCI_S2	52	190	0.03	15.2
TkA02G456420	`PF11264`	ThylakoidFormat	61	91	0.02	15.3
TkA02G456420	`PF11264`	ThylakoidFormat	165	209	0.02	15.3
TkA02G456420	`PF14676`	FANCI_S2	216	235	0.03	15.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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