RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G453100
Reference: TK1151 Chr: Chr02 Coordinates: 115329371-115333841 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3542 bp · TkA02G453100|TK1151|cDNA

ATAAAGTATAGATTAAAGAGTAGGCCCATAGTCGATAAAAAATTTCTTTCACCCAATAAAAATTTCAAACTCTTTTCATTTCCCGCTCCCCATTTCGAAAATCAGATTCGAGAAGAGAAAGAGAGAAAGCCACACAGATTTGCTTTCAGAAGCATCTACAATGGCTGTCGAAATTTCTGAAGAGAAGCTCTTGATGCAGAAGATAGCTAAGGTTTTTAACGACGCTCTAGCGTCTCGAGCATCTCACATCCGCAAGCTTA...

CDS

Download CDS FASTA

3093 bp · TkA02G453100|TK1151|CDS

ATGGCTGTCGAAATTTCTGAAGAGAAGCTCTTGATGCAGAAGATAGCTAAGGTTTTTAACGACGCTCTAGCGTCTCGAGCATCTCACATCCGCAAGCTTAAAGACCTTTCAGCTCTCCGTTCTTCGATTCCTATTGCTCAATTTTTCGACGCTTTCTCTAAAAACCTAATCCCCATCTTCAATACCCAGCGCCGTATCGCCTCTGTCGAACGGATGGTTCAATTTGTTGCTATTTTTGCCTGCCTACGCGATCCTAACAA...

Protein

Download Protein FASTA

1030 aa · TkA02G453100|TK1151|PROTEIN

MAVEISEEKLLMQKIAKVFNDALASRASHIRKLKDLSALRSSIPIAQFFDAFSKNLIPIFNTQRRIASVERMVQFVAIFACLRDPNNSEDCDAFFEQFLRFLIVGTTAAGRTARFRACQIISEIIMRLPDDAEVSSELWDEVIDCIKVRVGDKAPVIRTYSIRALSRFANDAENSDILELFLQTLSSEQNPDVRKTILLSLPPSNETSTAIINCTLDVNESVRKAAYCVLASKFPLQSLSIKQRTIILQRGLADRSPAVT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G453100
TK1151 IDTkA02G453100
OH-1004 IDLXL04_014058
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G453100
LocationChr02:115329371-115333841 (+)
DescriptionSimilar to NCAPG: Condensin complex subunit 3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014058 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007076 mitotic chromosome condensation Biological Process
GO:0051301 cell division Biological Process
GO:0051984 positive regulation of chromosome segregation Biological Process
GO:1905820 positive regulation of chromosome separation Biological Process
GO:1905821 positive regulation of chromosome condensation Biological Process
GO:0000779 condensed chromosome, centromeric region Cellular Component
GO:0000793 condensed chromosome Cellular Component
GO:0000794 condensed nuclear chromosome Cellular Component
GO:0000796 condensin complex Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
KEGG gene cross-reference
hsa:64151
spo:2539121
xla:398088
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.930
Rank 1 · TkA02G453100 · TK1151
Cytoplasm0.140
Rank 2 · TkA02G453100 · TK1151
Cell membrane0.021
Rank 3 · TkA02G453100 · TK1151
Mitochondrion0.013
Rank 4 · TkA02G453100 · TK1151
Endoplasmic reticulum0.012
Rank 5 · TkA02G453100 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05338DUF71742-72 aa
PF05338DUF71789-115 aa
PF12719Cnd3110-197 aa
PF25786HEAT_GCN1_C120-208 aa
PF01602Adaptin_N132-201 aa
PF12717Cnd1137-218 aa
PF02985HEAT143-170 aa
PF13646HEAT_2151-201 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G453100PF05338DUF71742720.2312.3
TkA02G453100PF05338DUF717891150.2312.3
TkA02G453100PF12719Cnd31101971.7e-53182.4
TkA02G453100PF25786HEAT_GCN1_C1202080.04714.4
TkA02G453100PF01602Adaptin_N1322010.0313.6
TkA02G453100PF12717Cnd11372180.04314.6
TkA02G453100PF02985HEAT1431700.001119.7
TkA02G453100PF13646HEAT_21512010.0001322.8
TkA02G453100PF02985HEAT1772010.001119.7
TkA02G453100PF13646HEAT_21792310.0001322.8
TkA02G453100PF01602Adaptin_N2092680.0313.6
TkA02G453100PF12717Cnd12092740.04314.6
TkA02G453100PF02985HEAT2112260.001119.7
TkA02G453100PF02985HEAT2482630.001119.7
TkA02G453100PF12719Cnd35168601.7e-53182.4
TkA02G453100PF13646HEAT_25495720.0001322.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser