TkA02G432480 | RubberDandelionOmics

Gene overview

TkA02G432480

Reference: TK1151 Chr: Chr02 Coordinates: 109885775-109892407 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1896 bp · TkA02G432480|TK1151|cDNA

AAAATGCAACCTTGATTGTATCAATTTTGTTATTGCTTTGAGTTTCCCAATTTCCGTTTTTTCGATCTACCCCCAATTTCTTTAATCAATTTAAAGCTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGAGCTAGACGTAGTGTTGATCATTGGTGGAATATGAGTAGCTTATTCGTGTCGTCATAGTTGGGCACTGATGTTACCATCATCAATTTGACACGCACATATTCTAATTATCTGACTTCACTGAAGTA...

CDS

Download CDS FASTA

1236 bp · TkA02G432480|TK1151|CDS

ATGAACGCTTTAGCGGCAACAAACCGTAACTTTAAGCTGGCAGCTCGCCTGTTGGGGTTAGACTCCAAACTCGAAAAGAGTCTTCTCATTCCGTTCAGAGAAATCAAGGTTGAGTGTACAATTCCAAAAGATGATGGTAGCTTGGTATCTTACGTCGGGTTCAGGATTCAACATGACAATGCTCGAGGACCGATGAAAGGGGGAATCAGATACCATCCGGAGGTCGATCCCGATGAGGTGAACGCTTTAGCGCAACTGAT...

Protein

Download Protein FASTA

411 aa · TkA02G432480|TK1151|PROTEIN

MNALAATNRNFKLAARLLGLDSKLEKSLLIPFREIKVECTIPKDDGSLVSYVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGELSISELERLTRVFTQKIHDLIGIHTDVPAPDMGTGPQTMAWILDEYSKFHGYSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNDHGKTVSGQRFVIQGFGNVGSWAAQLIHEAGGKVVAVSDISGAIHDKNGIDIPSLMKHVKEH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G432480`
TK1151 ID	TkA02G432480
OH-1004 ID	LXL04_014373
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G432480

Location Chr02:109885775-109892407 (-)

Description Similar to GDH1: Glutamate dehydrogenase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g18170`	Glutamate dehydrogenase 1.	No verified direct reference in this release
`At3g03910`	Probable glutamate dehydrogenase 3.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2XMV1`	Glutamate dehydrogenase 1, mitochondrial.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014373 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006538 L-glutamate catabolic process Biological Process

GO:0006995 cellular response to nitrogen starvation Biological Process

GO:0009646 response to absence of light Biological Process

GO:0019740 nitrogen utilization Biological Process

GO:1901698 response to nitrogen compound Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005759 mitochondrial matrix Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0004352 glutamate dehydrogenase (NAD+) activity Molecular Function

KEGG gene cross-reference

ath:AT3G03910

ath:AT5G18170

dosa:Os03g0794500

sly:544015

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.490

Rank 1 · TkA02G432480 · TK1151

Mitochondrion0.302

Rank 2 · TkA02G432480 · TK1151

Nucleus0.154

Rank 3 · TkA02G432480 · TK1151

Plastid0.109

Rank 4 · TkA02G432480 · TK1151

Peroxisome0.089

Rank 5 · TkA02G432480 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02812ELFV_dehydrog_N33-159 aa

PF00208ELFV_dehydrog176-408 aa

PF028262-Hacid_dh_C199-243 aa

PF00670AdoHcyase_NAD204-234 aa

PF17976zf-RING_12283-315 aa

PF17976zf-RING_12377-393 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G432480	`PF02812`	ELFV_dehydrog_N	33	159	1.2e-49	168.0
TkA02G432480	`PF00208`	ELFV_dehydrog	176	408	7e-83	278.8
TkA02G432480	`PF02826`	2-Hacid_dh_C	199	243	0.0074	16.4
TkA02G432480	`PF00670`	AdoHcyase_NAD	204	234	0.12	13.2
TkA02G432480	`PF17976`	zf-RING_12	283	315	0.016	16.2
TkA02G432480	`PF17976`	zf-RING_12	377	393	0.016	16.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q43314`	Arabidopsis thaliana	sp\|Q43314\|DHE1_ARATH Glutamate dehydrogenase 1	89.800%	Swiss-Prot	High
`Q9S7A0`	Arabidopsis thaliana	sp\|Q9S7A0\|DHE3_ARATH Probable glutamate dehydrogenase 3	86.600%	Swiss-Prot	High
`A2XMV1`	Oryza sativa subsp. indica	sp\|A2XMV1\|DHE1_ORYSI Glutamate dehydrogenase 1, mitochondrial	86.400%	Swiss-Prot	High

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