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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G408950
Reference: TK1151 Chr: Chr02 Coordinates: 104028216-104034586 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3744 bp · TkA02G408950|TK1151|cDNA

ATGAAACCTCTGCCATTACCATCCACGTTGTTCGCCCGTCGTTCGTTCCTGTAGAAAACCCTTTCCACCTCCCTCATTTTTATGGCGGGAACGACTTCCCTTCTCTCACACCGTATCCCCTGGAAATCCCTAAATTTGAAAAGAATCCCAGCTCCGGTTTACAGAAACATGTACTGGATCGCGGCCAAGTCCGTTGCCTTCTCAGTTCCCAGGTGGTCCTCTATCGGTTTTCACGTCCACTTCCCTCTTCGCCGTCGTCA...

CDS

Download CDS FASTA

3411 bp · TkA02G408950|TK1151|CDS

ATGGCGGGAACGACTTCCCTTCTCTCACACCGTATCCCCTGGAAATCCCTAAATTTGAAAAGAATCCCAGCTCCGGTTTACAGAAACATGTACTGGATCGCGGCCAAGTCCGTTGCCTTCTCAGTTCCCAGGTGGTCCTCTATCGGTTTTCACGTCCACTTCCCTCTTCGCCGTCGTCACTTTGCATCCTCTACGCCATGGCAACCTAAGCAGGTCCACTGTTCCAAAGAAAGAAAATCTACAAGCACCAAATCAGCAAA...

Protein

Download Protein FASTA

1136 aa · TkA02G408950|TK1151|PROTEIN

MAGTTSLLSHRIPWKSLNLKRIPAPVYRNMYWIAAKSVAFSVPRWSSIGFHVHFPLRRRHFASSTPWQPKQVHCSKERKSTSTKSAKRPRELKDDIDEKYFPHIMWWKEKMETCMKSSSTQLVKRLSYSNLLGLDENLKNGSLKEGSLNSEVLKFKSRFPREVLLCRVGEFYEAVGFDACILVEYAGLNPMGGLRSDSIPKAGCPVVNLRQTLDDLTRNGFSVCIVEEVQGPTQSRSRKSRFISGHAHPGSPYVFGLVED...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G408950
TK1151 IDTkA02G408950
OH-1004 IDLXL04_014604
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.200
Protein coverage (%)TK1151 94.102 / OH-1004 90.525
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G408950
LocationChr02:104028216-104034586 (+)
DescriptionSimilar to MSH1: DNA mismatch repair protein MSH1, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g24320 DNA mismatch repair protein specifically involved in maintenance of mitochondrial genome configuration by controlling specific rearranged portion.
Diversity of the Arabidopsis mitochondrial genome occurs via nuclear-controlled recombination activity.2009 · DOI: 10.1534/genetics.109.108514
Extensive rearrangement of the Arabidopsis mitochondrial genome elicits cellular conditions for thermotolerance.2010 · DOI: 10.1104/pp.109.152827
Utility of in vitro culture to the study of plant mitochondrial genome configuration and its dynamic features.2012 · DOI: 10.1007/s00122-012-1844-4

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014604 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006298 mismatch repair Biological Process
GO:0009408 response to heat Biological Process
GO:0032042 mitochondrial DNA metabolic process Biological Process
GO:0043504 mitochondrial DNA repair Biological Process
GO:1905951 mitochondrion DNA recombination Biological Process
GO:0005634 nucleus Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009536 plastid Cellular Component
GO:0042651 thylakoid membrane Cellular Component
GO:0003677 DNA binding Molecular Function
KEGG gene cross-reference
ath:AT3G24320
lac:LBA0408
lhe:lhv_0427
ljo:LJ_0465
rrs:RoseRS_3706
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.636
Rank 1 · TkA02G408950 · TK1151
Mitochondrion0.343
Rank 2 · TkA02G408950 · TK1151
Nucleus0.075
Rank 3 · TkA02G408950 · TK1151
Cytoplasm0.066
Rank 4 · TkA02G408950 · TK1151
Peroxisome0.021
Rank 5 · TkA02G408950 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13476AAA_2378-122 aa
PF01624MutS_I151-247 aa
PF01624MutS_I551-599 aa
PF13514AAA_27556-592 aa
PF00005ABC_tran775-804 aa
PF13481AAA_25775-806 aa
PF13555AAA_29778-799 aa
PF25199nSTAND_NTPase5779-807 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G408950PF13476AAA_23781220.0001123.7
TkA02G408950PF01624MutS_I1512471.1e-1042.5
TkA02G408950PF01624MutS_I5515991.1e-1042.5
TkA02G408950PF13514AAA_275565920.2311.7
TkA02G408950PF00005ABC_tran7758040.008417.4
TkA02G408950PF13481AAA_257758060.4111.0
TkA02G408950PF13555AAA_297787990.006117.0
TkA02G408950PF25199nSTAND_NTPase57798070.2611.8
TkA02G408950PF13514AAA_277808100.2311.7
TkA02G408950PF13476AAA_237828100.0001123.7
TkA02G408950PF13304AAA_217858020.1712.5
TkA02G408950PF00488MutS_V7869664.3e-39135.1
TkA02G408950PF00004AAA7868720.01216.7
TkA02G408950PF01541GIY-YIG104510813.2e-0524.9
TkA02G408950PF13481AAA_25105210860.4111.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q84LK0Arabidopsis thalianasp|Q84LK0|MSH1_ARATH DNA mismatch repair protein MSH1, mitochondrial66.200%Swiss-ProtHigh

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