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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G406920
Reference: TK1151 Chr: Chr02 Coordinates: 103476793-103481118 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2627 bp · TkA02G406920|TK1151|cDNA

AAAAAAACGATTTTTACGAGTGGCAAAAAACCTCAGCAAATGCACACCACGTCGGCTTTTCCAACCCATCAGCTCTTTCCATAGACCCCAACAATTCTCAACAAACGCTGCTCTGCCCACCTCTTCTGTTCATCAGATCTTGCTCGATTTCTTGCATTCACTCGCCCAATTCAATTCGATTCAACTTAGCTTAATTTCAATCATTTGAAAAGTTTATAAATTATACGTGTTAATTTGATTATTATATCATCGTCATCGTT...

CDS

Download CDS FASTA

2040 bp · TkA02G406920|TK1151|CDS

ATGGAATCGAGCAGGAGAGCGGTGGAATCGTACTGGAGGTCACGGTTGATCGATGCCGCGACCTCTGATGAAGATAAAGTGGCGCCTGTTTACAAGTTGGAAGAAATATGCGAACTCCTACGTTCGTCCCACGTGTCAATCGTCAAAGAAGTTTCTGAATTCATCTTCAAACGTCTGCAACACAAATCCCCCATTGTCAAGCAAAAGGCTCTAAGAGTGATCAAGTATGCTGTGGGCAAGTCCGGTGTTGAATTCAGGAG...

Protein

Download Protein FASTA

679 aa · TkA02G406920|TK1151|PROTEIN

MESSRRAVESYWRSRLIDAATSDEDKVAPVYKLEEICELLRSSHVSIVKEVSEFIFKRLQHKSPIVKQKALRVIKYAVGKSGVEFRREMQRNSVAVRQLIHYKGQPDPLKGDALNKSVRETAQEALSAIFAGEDNSKPPPQEGLTQRIQGFGNTNFDIPSDDKKSFLSDMVGIGSATIKQGLNSFSQAQTHNRNDTGTYRGPNLRRSLTNETSYSDSREVPSQAVSTNASGSWGQDLKTSHTDTENGNASSSYSNEKSRE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G406920
TK1151 IDTkA02G406920
OH-1004 IDLXL04_014637
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G406920
LocationChr02:103476793-103481118 (-)
DescriptionSimilar to MTV1: Protein MODIFIED TRANSPORT TO THE VACUOLE 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g16270 Mediates clathrin-dependent trafficking of vacuolar cargo from the trans-Golgi network (TGN). No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014637 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0035652 clathrin-coated vesicle cargo loading Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005768 endosome Cellular Component
GO:0005802 trans-Golgi network Cellular Component
GO:0005829 cytosol Cellular Component
GO:0030124 AP-4 adaptor complex Cellular Component
GO:0030136 clathrin-coated vesicle Cellular Component
GO:0030662 coated vesicle membrane Cellular Component
GO:0031090 organelle membrane Cellular Component
GO:0032588 trans-Golgi network membrane Cellular Component
GO:0030276 clathrin binding Molecular Function
KEGG gene cross-reference
ath:AT3G16270
hsa:146705
mmu:78777
rno:360673
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.585
Rank 1 · TkA02G406920 · TK1151
Golgi apparatus0.352
Rank 2 · TkA02G406920 · TK1151
Nucleus0.161
Rank 3 · TkA02G406920 · TK1151
Lysosome / Vacuole0.101
Rank 4 · TkA02G406920 · TK1151
Endoplasmic reticulum0.100
Rank 5 · TkA02G406920 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00790VHS15-92 aa
PF01417ENTH17-126 aa
PF24722DUF767436-67 aa
PF08167RIX138-164 aa
PF25827TVHS-like48-75 aa
PF02985HEAT54-74 aa
PF02985HEAT116-129 aa
PF25827TVHS-like259-366 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G406920PF00790VHS15921.2e-0525.9
TkA02G406920PF01417ENTH171264e-0937.3
TkA02G406920PF24722DUF767436670.1712.7
TkA02G406920PF08167RIX1381640.04214.3
TkA02G406920PF25827TVHS-like48754.7e-0523.9
TkA02G406920PF02985HEAT54740.02415.6
TkA02G406920PF02985HEAT1161290.02415.6
TkA02G406920PF25827TVHS-like2593664.7e-0523.9
TkA02G406920PF26228RESC9_N2613860.03413.5
TkA02G406920PF24722DUF76742963500.1712.7
TkA02G406920PF00790VHS2973801.2e-0525.9
TkA02G406920PF02985HEAT3033170.02415.6
TkA02G406920PF01417ENTH3053724e-0937.3
TkA02G406920PF08167RIX13053490.04214.3
TkA02G406920PF02985HEAT3433650.02415.6
TkA02G406920PF08167RIX15415550.04214.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C5H4Arabidopsis thalianasp|Q9C5H4|MTV1_ARATH Protein MODIFIED TRANSPORT TO THE VACUOLE 154.300%Swiss-ProtHigh

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