TkA02G404960 | RubberDandelionOmics

Gene overview

TkA02G404960

Reference: TK1151 Chr: Chr02 Coordinates: 102908134-102910922 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

645 bp · TkA02G404960|TK1151|cDNA

ATGAAGAGGCGTAATCGTAATTCATTGTCTACTTTTCCCACATTAATAGTAATCTATGACATCTTCTTCTTTATTCAGTCGCTGACAGCAAGGGCAGAGGTATCTCTCACCGCCTGCAGTGGCACATCAGTACCAGTAATGATAAAAGTCTGGGTTAATGGTGTTGAAGGCCAAAAATTAGTGGGTAAAAGTGCAACATTTAGTGCAAATATTATCGAAAGGGCTGATGAAGGTGCTAAACAGTCTGTGATATTAGCAAA...

CDS

Download CDS FASTA

645 bp · TkA02G404960|TK1151|CDS

ATGAAGAGGCGTAATCGTAATTCATTGTCTACTTTTCCCACATTAATAGTAATCTATGACATCTTCTTCTTTATTCAGTCGCTGACAGCAAGGGCAGAGGTATCTCTCACCGCCTGCAGTGGCACATCAGTACCAGTAATGATAAAAGTCTGGGTTAATGGTGTTGAAGGCCAAAAATTAGTGGGTAAAAGTGCAACATTTAGTGCAAATATTATCGAAAGGGCTGATGAAGGTGCTAAACAGTCTGTGATATTAGCAAA...

Protein

Download Protein FASTA

214 aa · TkA02G404960|TK1151|PROTEIN

MKRRNRNSLSTFPTLIVIYDIFFFIQSLTARAEVSLTACSGTSVPVMIKVWVNGVEGQKLVGKSATFSANIIERADEGAKQSVILANPSNCCSNLSSQLSGYTVLAPRGDCYYLIKANVAQAGGATGLVIISDTEDIFIMDCSEKARLDISIPIVMITKHGGGALYKYLSRGGKVELVIYATKRPLFDPIEAFLWLIPIATLVCVSFIIHDFHS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G404960`
TK1151 ID	TkA02G404960
OH-1004 ID	LXL04_014680
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	70.500
Protein coverage (%)	TK1151 96.262 / OH-1004 39.205 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G404960

Location Chr02:102908134-102910922 (-)

Description Similar to SPPL3: Signal peptide peptidase-like 3

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g43070`	Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.	No verified direct reference in this release
`At1g01650`	Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.	No verified direct reference in this release
`At3g52850`	Vacuolar-sorting receptor (VSR) involved in clathrin-coated vesicles sorting from Golgi apparatus to vacuoles.	Vacuolar sorting receptor for seed storage proteins in Arabidopsis thaliana.2003 · DOI: 10.1073/pnas.2530568100

Rice

Reference gene ID	Possible function	Papers / DOI
`Os11g0433200`	Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014680 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0033619 membrane protein proteolysis Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005765 lysosomal membrane Cellular Component

GO:0005768 endosome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0010008 endosome membrane Cellular Component

GO:0030660 Golgi-associated vesicle membrane Cellular Component

GO:0098553 lumenal side of endoplasmic reticulum membrane Cellular Component

GO:0098554 cytoplasmic side of endoplasmic reticulum membrane Cellular Component

GO:0042500 aspartic endopeptidase activity, intramembrane cleaving Molecular Function

KEGG gene cross-reference

ath:AT1G05820

ath:AT1G63690

ath:AT2G43070

dosa:Os06g0730900

dosa:Os11g0433200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.337

Rank 1 · TkA02G404960 · TK1151

Cell membrane0.308

Rank 2 · TkA02G404960 · TK1151

Endoplasmic reticulum0.162

Rank 3 · TkA02G404960 · TK1151

Cytoplasm0.158

Rank 4 · TkA02G404960 · TK1151

Golgi apparatus0.109

Rank 5 · TkA02G404960 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02225PA85-162 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G404960	`PF02225`	PA	85	162	1.9e-09	38.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q4V3B8`	Arabidopsis thaliana	sp\|Q4V3B8\|SIPL3_ARATH Signal peptide peptidase-like 3	37.700%	Swiss-Prot	Medium
`Q0WMJ8`	Arabidopsis thaliana	sp\|Q0WMJ8\|SIPL4_ARATH Signal peptide peptidase-like 4	32.000%	Swiss-Prot	Medium
`P93026`	Arabidopsis thaliana	sp\|P93026\|VSR1_ARATH Vacuolar-sorting receptor 1	37.000%	Swiss-Prot	Low
`Q53P98`	Oryza sativa subsp. japonica	sp\|Q53P98\|SIPL2_ORYSJ Signal peptide peptidase-like 2	40.800%	Swiss-Prot	Medium

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