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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G404810
Reference: TK1151 Chr: Chr02 Coordinates: 102871787-102874738 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1668 bp · TkA02G404810|TK1151|cDNA

TGGATCACACGGTCCACAATTATTATCGCCTCTGAAGAAACAGAGTATACAAAGCTAACTACGTGCTTCTCATCAACTACCTATCTGAATTCTACAATGAACCTGGCCGGACTTCTCGCTGGAATATTTCTGCTCCTGGCGGTCTACTGTGGAGTAGACCCTTTCAAGCACAGTGCAATTTCCGATTTCCCTGATTTTGAGGCCGTCAAAGTCGATTTGCCACAGTGGTCGGAAGTACCGACGGATAAAGACACTCAAAA...

CDS

Download CDS FASTA

1269 bp · TkA02G404810|TK1151|CDS

TGGATCACACGGTCCACAATTATTATCGCCTCTGAAGAAACAGAGTATACAAAGCTAACTACGTGCTTCTCATCAACTACCTATCTGAATTCTACAATGAACCTGGCCGGACTTCTCGCTGGAATATTTCTGCTCCTGGCGGTCTACTGTGGAGTAGACCCTTTCAAGCACAGTGCAATTTCCGATTTCCCTGATTTTGAGGCCGTCAAAGTCGATTTGCCACAGTGGTCGGAAGTACCGACGGATAAAGACACTCAAAA...

Protein

Download Protein FASTA

422 aa · TkA02G404810|TK1151|PROTEIN

WITRSTIIIASEETEYTKLTTCFSSTTYLNSTMNLAGLLAGIFLLLAVYCGVDPFKHSAISDFPDFEAVKVDLPQWSEVPTDKDTQNLLQKSEIKFLNQIQGPESVAFDPQGRGPYTGIADGRVVFWNGQSWSDFAYTSPNRSEICDPKPTILGYLKNEHICGRPLGLRFDKRTGDLYIADAYFGLLKVGPEGGLATSLVTEAEGVPLKFTNDVDIDDEGNVYFTDSSSKYQRRNFIHLVFSAEDSGRVLKYDPITKQTT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G404810
TK1151 IDTkA02G404810
OH-1004 IDLXL04_014685
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.200
Protein coverage (%)TK1151 93.365 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G404810
LocationChr02:102871787-102874738 (-)
DescriptionSimilar to SSL3: Protein STRICTOSIDINE SYNTHASE-LIKE 3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g08470 Protein STRICTOSIDINE SYNTHASE-LIKE 3. No verified direct reference in this release
At3g57030 Protein STRICTOSIDINE SYNTHASE-LIKE 10. No verified direct reference in this release
At3g59530 Required for the exine formation during pollen development. No verified direct reference in this release
At3g57010 Protein STRICTOSIDINE SYNTHASE-LIKE 8. No verified direct reference in this release
At3g57020 Protein STRICTOSIDINE SYNTHASE-LIKE 9. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014685 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009555 pollen development Biological Process
GO:0010584 pollen exine formation Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005773 vacuole Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009505 plant-type cell wall Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016787 hydrolase activity Molecular Function
KEGG gene cross-reference
ath:AT1G08470
ath:AT3G57010
ath:AT3G57020
ath:AT3G57030
ath:AT3G59530
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.444
Rank 1 · TkA02G404810 · TK1151
Lysosome / Vacuole0.186
Rank 2 · TkA02G404810 · TK1151
Golgi apparatus0.155
Rank 3 · TkA02G404810 · TK1151
Cytoplasm0.153
Rank 4 · TkA02G404810 · TK1151
Cell membrane0.110
Rank 5 · TkA02G404810 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20067SSL_N89-126 aa
PF08450SGL97-122 aa
PF01436NHL102-113 aa
PF10584Proteasome_A_N108-113 aa
PF01436NHL164-182 aa
PF08450SGL166-330 aa
PF03088Str_synth171-182 aa
PF03088Str_synth212-299 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G404810PF20067SSL_N891261.4e-0835.1
TkA02G404810PF08450SGL971228e-1349.3
TkA02G404810PF01436NHL1021133.6e-0524.3
TkA02G404810PF10584Proteasome_A_N1081130.1512.5
TkA02G404810PF01436NHL1641823.6e-0524.3
TkA02G404810PF08450SGL1663308e-1349.3
TkA02G404810PF03088Str_synth1711826.2e-32110.3
TkA02G404810PF03088Str_synth2122996.2e-32110.3
TkA02G404810PF20067SSL_N2132271.4e-0835.1
TkA02G404810PF01436NHL2132283.6e-0524.3
TkA02G404810PF07494Reg_prop2162240.0215.8
TkA02G404810PF01436NHL2662823.6e-0524.3
TkA02G404810PF07494Reg_prop2792910.0215.8
TkA02G404810PF01436NHL3173283.6e-0524.3
TkA02G404810PF07494Reg_prop3213280.0215.8
TkA02G404810PF08450SGL3733868e-1349.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8VWF6Arabidopsis thalianasp|Q8VWF6|SSL3_ARATH Protein STRICTOSIDINE SYNTHASE-LIKE 370.400%Swiss-ProtHigh
Q4V3D9Arabidopsis thalianasp|Q4V3D9|SSL10_ARATH Protein STRICTOSIDINE SYNTHASE-LIKE 1052.000%Swiss-ProtHigh
Q9M1B4Arabidopsis thalianasp|Q9M1B4|SSL13_ARATH Protein STRICTOSIDINE SYNTHASE-LIKE 1344.400%Swiss-ProtMedium
Q9M1J7Arabidopsis thalianasp|Q9M1J7|SSL8_ARATH Protein STRICTOSIDINE SYNTHASE-LIKE 846.400%Swiss-ProtMedium
Q9M1J6Arabidopsis thalianasp|Q9M1J6|SSL9_ARATH Protein STRICTOSIDINE SYNTHASE-LIKE 945.900%Swiss-ProtMedium

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