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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G399950
Reference: TK1151 Chr: Chr02 Coordinates: 101562035-101566875 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1861 bp · TkA02G399950|TK1151|cDNA

AAAACATCAGCGGTTTCCTTTCAGGGGTTTAGTTTTTTGGGCAGTCATCCGGATCAAAAAGTCAAAATCATAGACCATCCTCACTAGCTGCTACCAAATCACACTCTTTTCTTCCCGATTTCGCCTTCTCTCTCTCTCTCTCTCTCTACTCAGCTGCTTTCTCTTCAAGTCTCAGTATTCCAACGGCTTTGATTGTACCAATTCTACGGCCGACCTGAGCAGTAAAATAATCAAGGCGTCCACCCAATCTCTGTGTCTCT...

CDS

Download CDS FASTA

987 bp · TkA02G399950|TK1151|CDS

ATGGCAGAGCTCAGTCCAAGGACTGATACTTCAACAGATGGGGACACAGAAGACAAGGCTCTGGGGTTCCATAGTGGTCAATCACATGGGCTTGTGGTTTCTGATGCCAGTGACAAGTCAAGGGATCAAAAGACACTTCGTAGGCTTGCTCAGAATCGTGAAGCTGCAAGAAAGAGCCGTTTGCGGAAGAAAGCGTATGTCCAACAGCTAGAAAGCAGTAGAATGAAGCTGACCCAACTCGAACAAGAGCTACAACGAGC...

Protein

Download Protein FASTA

328 aa · TkA02G399950|TK1151|PROTEIN

MAELSPRTDTSTDGDTEDKALGFHSGQSHGLVVSDASDKSRDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRMKLTQLEQELQRARQQGIFISSSGEQSQSMSGNGALAFDVEYGRWLEEHNRRINELKGAVSNHAGDGELRIIVDGVVAHYEDIFRIKGDAAKADVFHVLSGMWKTPAERCFLWLGGFRSSELLKLLITQLEPLTEQQLLAIGNLQQSSQQAEDALSQGMEALQQSLAETIAGSLGSSNSSGNVANY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G399950
TK1151 IDTkA02G399950
OH-1004 IDLXL04_014748
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G399950
LocationChr02:101562035-101566875 (+)
DescriptionSimilar to Transcription factor HBP-1b(c1) (Fragment)
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g12250 Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0279900 Transcriptional regulator involved in defense response. No verified direct reference in this release
Os01g0808100 Transcriptional regulator involved in defense response. No verified direct reference in this release
Os03g0318600 Transcriptional regulator involved in defense response. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014748 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006952 defense response Biological Process
GO:0009410 response to xenobiotic stimulus Biological Process
GO:0009627 systemic acquired resistance Biological Process
GO:0045893 positive regulation of DNA-templated transcription Biological Process
GO:0005634 nucleus Cellular Component
GO:0000976 transcription cis-regulatory region binding Molecular Function
GO:0003700 DNA-binding transcription factor activity Molecular Function
GO:0016787 hydrolase activity Molecular Function
GO:0043565 sequence-specific DNA binding Molecular Function
GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference
ath:AT3G12250
dosa:Os01g0279900
osa:4326907
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.763
Rank 1 · TkA02G399950 · TK1151
Cytoplasm0.277
Rank 2 · TkA02G399950 · TK1151
Cell membrane0.054
Rank 3 · TkA02G399950 · TK1151
Endoplasmic reticulum0.034
Rank 4 · TkA02G399950 · TK1151
Mitochondrion0.028
Rank 5 · TkA02G399950 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03131bZIP_Maf38-92 aa
PF26095CC_Bre139-89 aa
PF28673bZIP_CREBRF_C40-87 aa
PF07716bZIP_242-86 aa
PF00170bZIP_143-85 aa
PF27682ICR5_C43-90 aa
PF01618MotA_ExbB45-63 aa
PF01481Arteri_nucleo51-128 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G399950PF03131bZIP_Maf38920.01816.3
TkA02G399950PF26095CC_Bre139890.5511.2
TkA02G399950PF28673bZIP_CREBRF_C40870.008817.2
TkA02G399950PF07716bZIP_242865.5e-0627.0
TkA02G399950PF00170bZIP_143852.2e-0731.6
TkA02G399950PF27682ICR5_C43900.3312.5
TkA02G399950PF01618MotA_ExbB45630.510.9
TkA02G399950PF01481Arteri_nucleo511280.1413.2
TkA02G399950PF14144DOG11272011.3e-31109.3
TkA02G399950PF25521WHD_TANC11942480.02914.9
TkA02G399950PF26095CC_Bre12042620.5511.2
TkA02G399950PF30047TPR_SaeB2062680.02614.1
TkA02G399950PF01481Arteri_nucleo2142380.1413.2
TkA02G399950PF28673bZIP_CREBRF_C2162460.008817.2
TkA02G399950PF03131bZIP_Maf2202360.01816.3
TkA02G399950PF27682ICR5_C2212650.3312.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q39140Arabidopsis thalianasp|Q39140|TGA6_ARATH Transcription factor TGA677.400%Swiss-ProtHigh
Q0JNL3Oryza sativa subsp. japonicasp|Q0JNL3|TGA23_ORYSJ Transcription factor TGA2.380.100%Swiss-ProtHigh
Q6IVC2Oryza sativa subsp. japonicasp|Q6IVC2|TGAL1_ORYSJ Transcription factor TGAL178.000%Swiss-ProtHigh
Q6IVC3Oryza sativa subsp. japonicasp|Q6IVC3|TGA22_ORYSJ Transcription factor TGA2.276.600%Swiss-ProtHigh

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