LXL04_014748 | RubberDandelionOmics

Gene overview

LXL04_014748

Reference: OH-1004 Chr: Chr03 Coordinates: 56244542-56247527 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

987 bp · LXL04_014748|LXL04_014748|OH1004|cDNA

ATGGCAGAGCTCAGTCCAAGGACTGATACTTCAACAGATGGGGACACAGAAGACAAGGCTCTGGGGTTCCATAGTGGTCAATCACATGGGCTTGTGGTTTCTGATGCCAGTGATAAGTCAAGGGATCAAAAGACACTTCGTAGGCTTGCTCAGAATCGTGAAGCTGCAAGAAAGAGCCGTTTGCGGAAGAAaGCATATGTCCAACAGCTAGAAAGCAGTAGAATGAAGCTGACCCAACTCGAACAAGAGCTGCAACGAGC...

CDS

Download CDS FASTA

987 bp · LXL04_014748|LXL04_014748|OH1004|CDS

ATGGCAGAGCTCAGTCCAAGGACTGATACTTCAACAGATGGGGACACAGAAGACAAGGCTCTGGGGTTCCATAGTGGTCAATCACATGGGCTTGTGGTTTCTGATGCCAGTGATAAGTCAAGGGATCAAAAGACACTTCGTAGGCTTGCTCAGAATCGTGAAGCTGCAAGAAAGAGCCGTTTGCGGAAGAAAGCATATGTCCAACAGCTAGAAAGCAGTAGAATGAAGCTGACCCAACTCGAACAAGAGCTGCAACGAGC...

Protein

Download Protein FASTA

328 aa · LXL04_014748|LXL04_014748|OH1004|PROTEIN

MAELSPRTDTSTDGDTEDKALGFHSGQSHGLVVSDASDKSRDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRMKLTQLEQELQRARQQGIFISSSGEQSQSMSGNGALAFDVEYGRWLEEHNRRINELKGAVSNHAGDGELRIIVDGVVAHYEDIFRIKGDAAKADVFHVLSGMWKTPAERCFLWLGGFRSSELLKLLITQLEPLTEQQLLAIGNLQQSSQQAEDALSQGMEALQQSLAETIAGSLGSSNSSGNVANY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_014748`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_014748

Location Chr03:56244542-56247527 (-)

Description Similar to Transcription factor HBP-1b(c1) (Fragment)

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g12250`	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0808100`	Transcriptional regulator involved in defense response.	No verified direct reference in this release
`Os01g0279900`	Transcriptional regulator involved in defense response.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_014748 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006952 defense response Biological Process

GO:0009410 response to xenobiotic stimulus Biological Process

GO:0009627 systemic acquired resistance Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0016787 hydrolase activity Molecular Function

GO:0043565 sequence-specific DNA binding Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT3G12250

dosa:Os01g0279900

osa:4326907

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.763

Rank 1 · LXL04_014748 · OH-1004

Cytoplasm0.277

Rank 2 · LXL04_014748 · OH-1004

Cell membrane0.054

Rank 3 · LXL04_014748 · OH-1004

Endoplasmic reticulum0.034

Rank 4 · LXL04_014748 · OH-1004

Mitochondrion0.028

Rank 5 · LXL04_014748 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07716.21bZIP_242-86 aa

PF00170.27bZIP_143-85 aa

PF14144.12DOG1127-201 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_014748	`PF07716.21`	bZIP_2	42	86	5.5e-06	27.0
LXL04_014748	`PF00170.27`	bZIP_1	43	85	2.2e-07	31.6
LXL04_014748	`PF14144.12`	DOG1	127	201	1.3e-31	109.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q39140`	Arabidopsis thaliana	Transcription factor TGA6	76.435%	Swiss-Prot	strong database homology
`Q6IVC2`	Oryza sativa subsp. japonica	Transcription factor TGAL1	78.012%	Swiss-Prot	strong database homology
`Q0JNL3`	Oryza sativa subsp. japonica	Transcription factor TGA2.3	80.363%	Swiss-Prot	strong database homology

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