TkA02G398680 | RubberDandelionOmics

Gene overview

TkA02G398680

Reference: TK1151 Chr: Chr02 Coordinates: 101259065-101265181 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2447 bp · TkA02G398680|TK1151|cDNA

ATACACATGAACCAAAATTATGGATTGGTATGAGTAAATATGCAATTGAAGTGTGAAATGCGCCCTTAATAAATGTGCTACAACCACCAACCATATTCGTCCACTAAATGCACCACTCACTCAGCCACACTGCAACCACAAAAAGGTGCGATTCGATCATTCGAAGGTGGTTGTACGTTTAGCAGTATCTACTTTTATCTTATTTCCTTCTTCTTTTCTTAAAAACCTGAAAGAATCAACAATGGAAATAGAACCTGCCA...

CDS

Download CDS FASTA

486 bp · TkA02G398680|TK1151|CDS

ATGGAAATAGAACCTGCCAGTAGCAGCGGTGGCTACCATCGCCGTGGTAATGTCAGCAATACTGATGAGGACAGTGACGACGGCGGCGTAACTATGGGTGCGAGCAGGAGTATGAGGGAAAGAGCGACGTATTGGTTGTGGCGAGATCTAACGGTGGTGTTACCAATTTTCGGCCATGGACACACCAAGAGATTACTTAGTGGAATCTCTGGATATGCAGAACCAGGTCGAATCATGGCCATCATGGGCCCATCTGGCTC...

Protein

Download Protein FASTA

161 aa · TkA02G398680|TK1151|PROTEIN

MEIEPASSSGGYHRRGNVSNTDEDSDDGGVTMGASRSMRERATYWLWRDLTVVLPIFGHGHTKRLLSGISGYAEPGRIMAIMGPSGSGKSTLLDSLAESIIKERGNDRRSSSQRREEKTKLRRRRLCHTRRRANGNAHSSRTITYSAYLRLPTTLSNEEVK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G398680`
TK1151 ID	TkA02G398680
OH-1004 ID	LXL04_005164
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	48.900
Protein coverage (%)	TK1151 81.988 / OH-1004 18.057 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G398680

Location Chr02:101259065-101265181 (+)

Description Similar to ABCG15: ABC transporter G family member 15

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g21090`	ABC transporter G family member 15.	No verified direct reference in this release
`At1g51500`	Involved in the secretion of cuticular wax from epidermal cells to the cuticle, especially in the transport of aldehydes, alcohols and acids.	Cuticular waxes on eceriferum mutants of Arabidopsis thaliana.2001 · DOI: 10.1016/s0031-9422(00)00513-6 Plant cuticular lipid export requires an ABC transporter.2004 · DOI: 10.1126/science.1102331 Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.2016 · DOI: 10.1016/j.bbalip.2016.03.002 The effects of surface structure mutations in Arabidopsis thaliana on the polarization of reflections from virus-infected leaves.2017 · DOI: 10.1371/journal.pone.0174014
`At1g51460`	ABC transporter G family member 13.	No verified direct reference in this release
`At1g17840`	Required for the cuticle, root suberin and pollen coat development by controlling cutin and maybe wax transport to the extracellular matrix.	Characterization of Arabidopsis ABCG11/WBC11, an ATP binding cassette (ABC) transporter that is required for cuticular lipid secretion.2007 · DOI: 10.1111/j.1365-313x.2007.03252.x The Arabidopsis DESPERADO/AtWBC11 transporter is required for cutin and wax secretion.2007 · DOI: 10.1104/pp.107.105676 Cytological and biochemical analysis of COF1, an Arabidopsis mutant of an ABC transporter gene.2007 · DOI: 10.1093/pcp/pcm139 An ABC transporter gene of Arabidopsis thaliana, AtWBC11, is involved in cuticle development and prevention of organ fusion.2007 · DOI: 10.1093/pcp/pcm152 The Arabidopsis DSO/ABCG11 transporter affects cutin metabolism in reproductive organs and suberin in roots.2010 · DOI: 10.1093/mp/ssp103 ABCG9, ABCG11 and ABCG14 ABC transporters are required for vascular development in Arabidopsis.2013 · DOI: 10.1111/tpj.12334 Expression analysis of transporter genes for screening candidate monolignol transporters using Arabidopsis thaliana cell suspensions during tracheary element differentiation.2018 · DOI: 10.1007/s10265-017-0979-4

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005164 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006869 lipid transport Biological Process

GO:0009611 response to wounding Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0010025 wax biosynthetic process Biological Process

GO:0010222 stem vascular tissue pattern formation Biological Process

GO:0010345 suberin biosynthetic process Biological Process

GO:0010588 cotyledon vascular tissue pattern formation Biological Process

GO:0010597 green leaf volatile biosynthetic process Biological Process

GO:0015908 fatty acid transport Biological Process

GO:0051607 defense response to virus Biological Process

GO:0055085 transmembrane transport Biological Process

KEGG gene cross-reference

ath:AT1G17840

ath:AT1G51460

ath:AT1G51500

ath:AT3G21090

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.391

Rank 1 · TkA02G398680 · TK1151

Nucleus0.324

Rank 2 · TkA02G398680 · TK1151

Cytoplasm0.271

Rank 3 · TkA02G398680 · TK1151

Endoplasmic reticulum0.077

Rank 4 · TkA02G398680 · TK1151

Lysosome / Vacuole0.051

Rank 5 · TkA02G398680 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03308MeaB61-103 aa

PF00005ABC_tran66-125 aa

PF00154RecA_N67-98 aa

PF09818ABC_ATPase69-110 aa

PF13481AAA_2569-101 aa

PF00931NB-ARC72-99 aa

PF13191AAA_1673-103 aa

PF25199nSTAND_NTPase574-126 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G398680	`PF03308`	MeaB	61	103	0.062	13.0
TkA02G398680	`PF00005`	ABC_tran	66	125	5.2e-09	37.5
TkA02G398680	`PF00154`	RecA_N	67	98	0.16	12.1
TkA02G398680	`PF09818`	ABC_ATPase	69	110	0.008	16.0
TkA02G398680	`PF13481`	AAA_25	69	101	0.016	15.5
TkA02G398680	`PF00931`	NB-ARC	72	99	0.0076	16.5
TkA02G398680	`PF13191`	AAA_16	73	103	0.00019	22.7
TkA02G398680	`PF25199`	nSTAND_NTPase5	74	126	0.0029	18.1
TkA02G398680	`PF01637`	ATPase_2	74	108	0.017	15.6
TkA02G398680	`PF03215`	Rad17	74	101	0.027	15.1
TkA02G398680	`PF13604`	AAA_30	75	105	0.024	15.1
TkA02G398680	`PF00437`	T2SSE	75	102	0.05	13.0
TkA02G398680	`PF03193`	RsgA_GTPase	76	104	0.00051	20.6
TkA02G398680	`PF13401`	AAA_22	76	103	0.0011	20.0
TkA02G398680	`PF20703`	nSTAND1	76	94	0.02	15.3
TkA02G398680	`PF24883`	NPHP3_N	76	103	0.15	12.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8RWI9`	Arabidopsis thaliana	sp\|Q8RWI9\|AB15G_ARATH ABC transporter G family member 15	45.900%	Swiss-Prot	Medium
`Q9C8K2`	Arabidopsis thaliana	sp\|Q9C8K2\|AB12G_ARATH ABC transporter G family member 12	46.500%	Swiss-Prot	Medium
`Q9C8J8`	Arabidopsis thaliana	sp\|Q9C8J8\|AB13G_ARATH ABC transporter G family member 13	42.500%	Swiss-Prot	Medium
`Q8RXN0`	Arabidopsis thaliana	sp\|Q8RXN0\|AB11G_ARATH ABC transporter G family member 11	57.400%	Swiss-Prot	Low

JBrowse

View in Genome Browser

Gene Card