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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G387310
Reference: TK1151 Chr: Chr02 Coordinates: 98440417-98442248 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1635 bp · TkA02G387310|TK1151|cDNA

TTCTCTCTTCCACTCACAAGTCACAACTCACAGATTATTTCTTACAATCGACTTCCTATCGATATTCAATCAAAATTCCGATCGCAATACATTTATTTTGACCACAAATGGCATCACGACAAGATCCTAGGGCAGGAGAAGATGTAACAGGAAAGGAAGTGAGGGCGGAGGAGGCCGCGAGATTCGCCGCAGATGAACTCCGAGACGTCAACAAACAAAGAGGAGTTGGTGGTACCGGCGGGGCGTCTGAAGTTGTTGTC...

CDS

Download CDS FASTA

1323 bp · TkA02G387310|TK1151|CDS

ATGGCATCACGACAAGATCCTAGGGCAGGAGAAGATGTAACAGGAAAGGAAGTGAGGGCGGAGGAGGCCGCGAGATTCGCCGCAGATGAACTCCGAGACGTCAACAAACAAAGAGGAGTTGGTGGTACCGGCGGGGCGTCTGAAGTTGTTGTCGAGCACCATCAAACACCATCCGAACAGAACCGTCCCGGAATCATTGGAAGCATTTTTCAAACGGTTACCGGCACTCTCGGTGGCGCCAAAGATGCCGTCATCGGAAA...

Protein

Download Protein FASTA

440 aa · TkA02G387310|TK1151|PROTEIN

MASRQDPRAGEDVTGKEVRAEEAARFAADELRDVNKQRGVGGTGGASEVVVEHHQTPSEQNRPGIIGSIFQTVTGTLGGAKDAVIGKTHEATEKASVVSQDAAERERRNRDETARKAEEYKNTAAEKAKEAKDTTMRKAGESKDYTAQKAGEAANKAGEYKDYTTQKAKETADSAAQKTKEAKDTTMGKMGEYKDYAAEKTKETADATAQKAKEAKDYTVDKAVAAKDYTAEKTKQTADATAQKAKEAKDATMEKMGEYK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G387310
TK1151 IDTkA02G387310
OH-1004 IDLXL04_014872
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 99.773 / OH-1004 85.243
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G387310
LocationChr02:98440417-98442248 (+)
DescriptionSimilar to Embryonic protein DC-8
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g36640 May be involved in the BHLH109-mediated regulation of somatic embryogenesis.
Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.2016 · DOI: 10.1016/j.jplph.2016.02.012

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014872 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009631 cold acclimation Biological Process
GO:0010227 floral organ abscission Biological Process
GO:0050826 response to freezing Biological Process
GO:1901002 positive regulation of response to salt stress Biological Process
GO:1902584 positive regulation of response to water deprivation Biological Process
GO:0005634 nucleus Cellular Component
GO:0005829 cytosol Cellular Component
KEGG gene cross-reference
ath:AT2G36640
ath:AT3G53040
dosa:Os03g0322900
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.627
Rank 1 · TkA02G387310 · TK1151
Nucleus0.263
Rank 2 · TkA02G387310 · TK1151
Cell membrane0.165
Rank 3 · TkA02G387310 · TK1151
Mitochondrion0.085
Rank 4 · TkA02G387310 · TK1151
Extracellular0.052
Rank 5 · TkA02G387310 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF27179Rv0313_N22-39 aa
PF28971COR1576-135 aa
PF02987LEA_480-91 aa
PF01442Apolipoprotein86-181 aa
PF28971COR1588-173 aa
PF02987LEA_4102-141 aa
PF16058Mucin-like110-149 aa
PF02987LEA_4121-153 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G387310PF27179Rv0313_N22390.6410.8
TkA02G387310PF28971COR15761351.9e-0938.3
TkA02G387310PF02987LEA_480911.2e-63211.4
TkA02G387310PF01442Apolipoprotein861810.0009119.7
TkA02G387310PF28971COR15881731.9e-0938.3
TkA02G387310PF02987LEA_41021411.2e-63211.4
TkA02G387310PF16058Mucin-like1101490.212.8
TkA02G387310PF02987LEA_41211531.2e-63211.4
TkA02G387310PF27179Rv0313_N1351420.6410.8
TkA02G387310PF02987LEA_41431781.2e-63211.4
TkA02G387310PF28971COR151442081.9e-0938.3
TkA02G387310PF07700HNOB1491931.010.0
TkA02G387310PF10984DUF27941561720.008116.9
TkA02G387310PF16058Mucin-like1612350.212.8
TkA02G387310PF01442Apolipoprotein1632810.0009119.7
TkA02G387310PF02987LEA_41722141.2e-63211.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SKP0Arabidopsis thalianasp|Q9SKP0|ECP63_ARATH Late embryogenesis abundant protein ECP6350.000%Swiss-ProtLow

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