TkA02G359020 | RubberDandelionOmics

Gene overview

TkA02G359020

Reference: TK1151 Chr: Chr02 Coordinates: 91215270-91220260 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2248 bp · TkA02G359020|TK1151|cDNA

ACGGCATAGCTTAACCGACCTTAACGCTCCATCAACGGCGTTTTCTGCATGCTTCACCCCAGCAAAGTGCAAAGTCATTATTTAACCATGGTTGAGTTAATTCCTGGAAACTATAAATCCCTTCGTCATCGTGTTCTCCCGCCACTTCATTCATTTCTCAAATCATAACTTCGAAAATTCAAACACATTTTTCTCTCTGAAATCGGAAAAATGATTGTTGAGCAGAAAGTGAAGGAAGCGGAGATTACCGAGCAGGATTC...

CDS

Download CDS FASTA

1764 bp · TkA02G359020|TK1151|CDS

ATGATTGTTGAGCAGAAAGTGAAGGAAGCGGAGATTACCGAGCAGGATTCTCTTCTCCTAACTAGGAATCTACTACGCATCGCAATATTCAATATCAGTTATATCAGAGGCCTTTTTCCTGAGAAATACTTCAGCGATAAGGGTGTCCCAGCCTTAGAGATGAAGATCAAAAAGCTCATGCCTATGGATGCAGAGTCCAGAAGACTAATTGACTGGATGGAGAAAGGTGTATATGATGCTTTGCAGAAGAAATATCTCAG...

Protein

Download Protein FASTA

587 aa · TkA02G359020|TK1151|PROTEIN

MIVEQKVKEAEITEQDSLLLTRNLLRIAIFNISYIRGLFPEKYFSDKGVPALEMKIKKLMPMDAESRRLIDWMEKGVYDALQKKYLRTLMFCICQTIEGPMIEEYSFSFSYSNSDSQEVSMNVNRIGNKKHGETFKCNSTTEITPNQMKSSACKMVRTLIQLMRTLDKMPEERTILMKLLYYDDVTPADYEPPFFRGCSEEEAHNPWNKNPLKMEVGNVNSKHFVLSLKVKSVLDPCEDENMSVGGDSMERDEDSEADSE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G359020`
TK1151 ID	TkA02G359020
OH-1004 ID	LXL04_032988
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	84.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G359020

Location Chr02:91215270-91220260 (+)

Description Similar to ASY1: Meiosis-specific protein ASY1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`UniProt: F4HRV8`	Required for normal meiosis in male and female gametophytes.	No verified direct reference in this release
`At4g32200`	Required for normal meiosis.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os09g0506800`	Essential factor for meiotic homologous chromosome pairing (synapsis).	An insertional mutation in the rice PAIR2 gene, the ortholog of Arabidopsis ASY1, results in a defect in homologous chromosome pairing during meiosis.2004 · DOI: 10.1007/s00438-003-0934-z PAIR2 is essential for homologous chromosome synapsis in rice meiosis I.2006 · DOI: 10.1242/jcs.02736

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032988 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007129 homologous chromosome pairing at meiosis Biological Process

GO:0007130 synaptonemal complex assembly Biological Process

GO:0007283 spermatogenesis Biological Process

GO:0009554 megasporogenesis Biological Process

GO:0009556 microsporogenesis Biological Process

GO:0042138 meiotic DNA double-strand break formation Biological Process

GO:0051026 chiasma assembly Biological Process

GO:0051177 meiotic sister chromatid cohesion Biological Process

GO:0051321 meiotic cell cycle Biological Process

GO:0051598 meiotic recombination checkpoint signaling Biological Process

GO:0060629 regulation of homologous chromosome segregation Biological Process

GO:0000228 nuclear chromosome Cellular Component

KEGG gene cross-reference

ath:AT1G67370

ath:AT4G32200

dosa:Os09g0506800

rno:365868

xla:496240

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.896

Rank 1 · TkA02G359020 · TK1151

Cytoplasm0.206

Rank 2 · TkA02G359020 · TK1151

Mitochondrion0.030

Rank 3 · TkA02G359020 · TK1151

Cell membrane0.028

Rank 4 · TkA02G359020 · TK1151

Golgi apparatus0.015

Rank 5 · TkA02G359020 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02301HORMA17-223 aa

PF21980MksE293-360 aa

PF02082Rrf2321-346 aa

PF21980MksE410-439 aa

PF02082Rrf2417-484 aa

PF02301HORMA548-576 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G359020	`PF02301`	HORMA	17	223	1.1e-63	215.2
TkA02G359020	`PF21980`	MksE	293	360	0.062	14.4
TkA02G359020	`PF02082`	Rrf2	321	346	0.034	15.1
TkA02G359020	`PF21980`	MksE	410	439	0.062	14.4
TkA02G359020	`PF02082`	Rrf2	417	484	0.034	15.1
TkA02G359020	`PF02301`	HORMA	548	576	1.1e-63	215.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4HRV8`	Arabidopsis thaliana	sp\|F4HRV8\|ASY1_ARATH Meiosis-specific protein ASY1	61.600%	Swiss-Prot	High
`F4JTJ9`	Arabidopsis thaliana	sp\|F4JTJ9\|ASY2_ARATH Meiosis-specific protein ASY2	56.200%	Swiss-Prot	Low
`Q76CY8`	Oryza sativa subsp. japonica	sp\|Q76CY8\|PAIR2_ORYSJ Meiosis-specific protein PAIR2	53.000%	Swiss-Prot	High

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