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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G342630
Reference: TK1151 Chr: Chr02 Coordinates: 87010597-87013053 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1931 bp · TkA02G342630|TK1151|cDNA

CACGTCACCGCCTCTCTCTTAAAGCATACACGGTCATCCAAGTCGCCATTTACGGCCATGGACTTCATCAGATGACTGCTGCAATCTGATTTCTTCTCCCTTTTGATTTCGTTCTCCACAATCTCTAGCTAGGGTTTAAGCTTTCTCTCTCTTAGGGTTTACCCACAGTAATGTCTACTCACGGCAGCAGCTACAGCTGCAACAATGCCTTCAGAAAAGGTGACGCGGTCGAGGTCCTTAGAAATGCCGACGACGGTGAC...

CDS

Download CDS FASTA

1455 bp · TkA02G342630|TK1151|CDS

ATGTCTACTCACGGCAGCAGCTACAGCTGCAACAATGCCTTCAGAAAAGGTGACGCGGTCGAGGTCCTTAGAAATGCCGACGACGGTGACGTTCCGGTCTGGTTTCCAGCAACTGTAATGGACTCTCCATCTTCTGAAGGGACTTTACATGTCAAGTTCACCACCTTATACATGGAAAGGTACGATAAGGATGGAAGGAAGAAGAGAAAGAAAATCAGGGATTACGTCCACATAACCGACAAAGTTAGGAGGCCGGATCT...

Protein

Download Protein FASTA

484 aa · TkA02G342630|TK1151|PROTEIN

MSTHGSSYSCNNAFRKGDAVEVLRNADDGDVPVWFPATVMDSPSSEGTLHVKFTTLYMERYDKDGRKKRKKIRDYVHITDKVRRPDLQAEPHRCFVVGEEVETFHENEWRRGKVKQVLENSMYKVVIGGAVEVAVEKSRVRVYPDGSSFPVAPQQEESSRQVLPSQKRAKLRIICKSRTSTTDPFPYGTPVEVRSYEEGYQGSWYTAIVVKSLDETKIMVQYETLKTDDEMQPLVETADVSNTRPLPPKLHQMDRYKMLE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G342630
TK1151 IDTkA02G342630
OH-1004 IDLXL04_015364
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.800
Protein coverage (%)TK1151 98.554 / OH-1004 93.164
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G342630
LocationChr02:87010597-87013053 (+)
DescriptionSimilar to AGDP1: Protein AGENET DOMAIN (AGD)-CONTAINING P1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g09320 Heterochromatin-binding protein that preferentially occupies long transposons and specifically recognizes the histone H3 'Lys-9' methylation (H3K9me) marks, with a stronger affinity for dimethylated H3K9 (H3K9me2).
Arabidopsis AGDP1 links H3K9me2 to DNA methylation in heterochromatin.2018 · DOI: 10.1038/s41467-018-06965-w
Plant HP1 protein ADCP1 links multivalent H3K9 methylation readout to heterochromatin formation.2019 · DOI: 10.1038/s41422-018-0104-9

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_015364 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006346 DNA methylation-dependent constitutive heterochromatin formation Biological Process
GO:0000775 chromosome, centromeric region Cellular Component
GO:0000792 heterochromatin Cellular Component
GO:0005634 nucleus Cellular Component
GO:0042393 histone binding Molecular Function
GO:0140566 histone reader activity Molecular Function
KEGG gene cross-reference
ath:AT1G09320
ath:AT2G47230
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.855
Rank 1 · TkA02G342630 · TK1151
Cytoplasm0.205
Rank 2 · TkA02G342630 · TK1151
Cell membrane0.040
Rank 3 · TkA02G342630 · TK1151
Endoplasmic reticulum0.031
Rank 4 · TkA02G342630 · TK1151
Plastid0.011
Rank 5 · TkA02G342630 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07238PilZ1-56 aa
PF15057DUF453711-54 aa
PF23327Chromo_MORC2_6th16-73 aa
PF05641Agenet17-62 aa
PF23327Chromo_MORC2_6th97-120 aa
PF05641Agenet98-141 aa
PF22987Tudor_KDM3B101-122 aa
PF00567TUDOR105-127 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G342630PF07238PilZ1560.02515.6
TkA02G342630PF15057DUF453711540.05214.3
TkA02G342630PF23327Chromo_MORC2_6th16730.009716.3
TkA02G342630PF05641Agenet17622.3e-43147.2
TkA02G342630PF23327Chromo_MORC2_6th971200.009716.3
TkA02G342630PF05641Agenet981412.3e-43147.2
TkA02G342630PF22987Tudor_KDM3B1011220.4611.0
TkA02G342630PF00567TUDOR1051270.1612.7
TkA02G342630PF10808DUF25421081240.07514.2
TkA02G342630PF15057DUF45371111380.05214.3
TkA02G342630PF10808DUF25421231430.07514.2
TkA02G342630PF22987Tudor_KDM3B1381430.4611.0
TkA02G342630PF07238PilZ1802290.02515.6
TkA02G342630PF05641Agenet1882482.3e-43147.2
TkA02G342630PF23327Chromo_MORC2_6th1882140.009716.3
TkA02G342630PF15057DUF45371902280.05214.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q500V5Arabidopsis thalianasp|Q500V5|AGDP1_ARATH Protein AGENET DOMAIN (AGD)-CONTAINING P130.100%Swiss-ProtMedium

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