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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G336800
Reference: TK1151 Chr: Chr02 Coordinates: 85488594-85496028 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1241 bp · TkA02G336800|TK1151|cDNA

AGCAAATTCATGTGCAATTTATGAATGTGTAGATCGTAACTTTACAAGTCAATTTGATATTATAATTTGCAAGCAGATGACCTAAATAAACCGCTCAATTAAAATCCACACTTCTCCTTCATAGCATTAGGTTGTGCTGCCAAGGGCAAGACAGGTGGAGGGTGACCGCGACACCGGAAAGGGGCGGAGGGCGCAGTGGTGGTAGGCGAAGGTGCAACAGTATGCGTCTCTGGTTTGCAGCCCTGTCTTGAGTATGAAAG...

CDS

Download CDS FASTA

1134 bp · TkA02G336800|TK1151|CDS

ATGAAAGGTGGACGCCATAAATTGGATAGAATTAGTGCTCTTCCTCAAGACACAATTGAAAAAATCCTTACTCTTATGCCAATCCGAGATGCAGTGAGGACGAGTATTCTGTCAAGGAAATGGAGGTTTTCTTGGACGACCATTCCGAAACTTGTATTTAATGACAACATGATTGTATCATCTCGTAACATACAACTCAACAAATATAAGTTTGTCACTGCCATCTTCCACGTTTTGTTGATACACAGTGCTCCGATATC...

Protein

Download Protein FASTA

377 aa · TkA02G336800|TK1151|PROTEIN

MKGGRHKLDRISALPQDTIEKILTLMPIRDAVRTSILSRKWRFSWTTIPKLVFNDNMIVSSRNIQLNKYKFVTAIFHVLLIHSAPISEFTLFVHRKPFNEIDQIILHLSRSKNIKKFIFKNAGNYQSYLLPCSLFSLKGLEHLDLTYCRFELPLMDKGFGMLKSLRFSEVDITNKMVLRFLANCPLLEQFTWITVHFIPLTDCELVELFKCLPSVQILQIPKLYIEHSVVGGMPHKPPMLLPHLRILVLNVSSFELPFVL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G336800
TK1151 IDTkA02G336800
OH-1004 IDLXL04_011168
Relationship / confidenceMulti Candidate From Tk1151 / Complex relationship
Protein identity (%)60.300
Protein coverage (%)TK1151 96.552 / OH-1004 29.934
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G336800
LocationChr02:85488594-85496028 (+)
DescriptionSimilar to At1g13570: F-box/FBD/LRR-repeat protein At1g13570
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g13570 F-box/FBD/LRR-repeat protein At1g13570. No verified direct reference in this release
At4g09920 F-box protein At4g09920. No verified direct reference in this release
At5g56810 Putative F-box/FBD/LRR-repeat protein At5g56810. No verified direct reference in this release
At4g10400 FBD-associated F-box protein At4g10400. No verified direct reference in this release
At5g56370 FBD-associated F-box protein At5g56370. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_011168 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005634 nucleus Cellular Component
KEGG gene cross-reference
ath:AT1G13570
ath:AT5G56440
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.772
Rank 1 · TkA02G336800 · TK1151
Cytoplasm0.338
Rank 2 · TkA02G336800 · TK1151
Endoplasmic reticulum0.038
Rank 3 · TkA02G336800 · TK1151
Cell membrane0.034
Rank 4 · TkA02G336800 · TK1151
Plastid0.017
Rank 5 · TkA02G336800 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646F-box11-48 aa
PF12937F-box-like11-42 aa
PF24758LRR_At5g56370106-193 aa
PF23622LRR_At1g61320_AtMIF1110-192 aa
PF08387FBD116-122 aa
PF08387FBD128-138 aa
PF07723LRR_2140-150 aa
PF07723LRR_2161-185 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G336800PF00646F-box11482.7e-0730.9
TkA02G336800PF12937F-box-like11420.113.1
TkA02G336800PF24758LRR_At5g563701061931.9e-1351.3
TkA02G336800PF23622LRR_At1g61320_AtMIF11101922.5e-1041.0
TkA02G336800PF08387FBD1161220.0004720.7
TkA02G336800PF08387FBD1281380.0004720.7
TkA02G336800PF07723LRR_21401500.09314.1
TkA02G336800PF07723LRR_21611850.09314.1
TkA02G336800PF08387FBD1801910.0004720.7
TkA02G336800PF23622LRR_At1g61320_AtMIF12103442.5e-1041.0
TkA02G336800PF24758LRR_At5g563702192741.9e-1351.3
TkA02G336800PF08387FBD2372490.0004720.7
TkA02G336800PF00646F-box2882962.7e-0730.9
TkA02G336800PF24758LRR_At5g563703003421.9e-1351.3
TkA02G336800PF08387FBD3053390.0004720.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FZ70Arabidopsis thalianasp|Q9FZ70|FDL1_ARATH F-box/FBD/LRR-repeat protein At1g1357029.800%Swiss-ProtLow
Q9T0F1Arabidopsis thalianasp|Q9T0F1|FB226_ARATH F-box protein At4g0992030.900%Swiss-ProtMedium
Q9FJT2Arabidopsis thalianasp|Q9FJT2|FDL40_ARATH Putative F-box/FBD/LRR-repeat protein At5g5681030.300%Swiss-ProtMedium
Q9SV82Arabidopsis thalianasp|Q9SV82|FBD40_ARATH FBD-associated F-box protein At4g1040031.100%Swiss-ProtMedium
Q9FM94Arabidopsis thalianasp|Q9FM94|FBD21_ARATH FBD-associated F-box protein At5g5637024.300%Swiss-ProtLow

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