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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G312240
Reference: TK1151 Chr: Chr02 Coordinates: 79450215-79454358 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1617 bp · TkA02G312240|TK1151|cDNA

ATGGAGGGTAGGGAGGGATTTAGAGTTAATAGTTCAAACATATGGAGGAACAGTGGTAGAGATTTCTTCTCAAGATCTTCACGTGAAGAAGACGATGAAGAAGCATTAAAATGGGCTGCAATTGAACGACTGCCCACTAATCTTCGATTACAGAGAGGCATACTGACCGAAGAAAAAGGCTGCCCGAAAGAGATTAATGTTAAGAATCTTGGATTGGTTGACAGAATGAATCTGTTAGAGAGGCTCGTTAAGATAGCAGA...

CDS

Download CDS FASTA

1617 bp · TkA02G312240|TK1151|CDS

ATGGAGGGTAGGGAGGGATTTAGAGTTAATAGTTCAAACATATGGAGGAACAGTGGTAGAGATTTCTTCTCAAGATCTTCACGTGAAGAAGACGATGAAGAAGCATTAAAATGGGCTGCAATTGAACGACTGCCCACTAATCTTCGATTACAGAGAGGCATACTGACCGAAGAAAAAGGCTGCCCGAAAGAGATTAATGTTAAGAATCTTGGATTGGTTGACAGAATGAATCTGTTAGAGAGGCTCGTTAAGATAGCAGA...

Protein

Download Protein FASTA

538 aa · TkA02G312240|TK1151|PROTEIN

MEGREGFRVNSSNIWRNSGRDFFSRSSREEDDEEALKWAAIERLPTNLRLQRGILTEEKGCPKEINVKNLGLVDRMNLLERLVKIAEEDNEKFLMKLKQRIDRALPTIFNFLINILEVLLLSPSVQNRIPKLGTCSNRYRSVTELPGSLNYLHLLPSRKKSLPILHDVSGIVKPGRMTLLLGPPSSGKTTLLLALAGKLGSDLQVSGKVTYNGHEMDEFVPQRTSAYISQYDLHIGEMTVRETLAFSARCQGVGANYEML...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G312240
TK1151 IDTkA02G312240
OH-1004 IDLXL04_015583
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)89.200
Protein coverage (%)TK1151 99.814 / OH-1004 36.828
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G312240
LocationChr02:79450215-79454358 (-)
DescriptionSimilar to PDR1: Pleiotropic drug resistance protein 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_015583 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002229 defense response to oomycetes Biological Process
GO:0009408 response to heat Biological Process
GO:0009409 response to cold Biological Process
GO:0009414 response to water deprivation Biological Process
GO:0009723 response to ethylene Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0009751 response to salicylic acid Biological Process
GO:0009753 response to jasmonic acid Biological Process
GO:0009914 hormone transport Biological Process
GO:0010193 response to ozone Biological Process
GO:0010496 intercellular transport Biological Process
KEGG gene cross-reference
ath:AT1G15520
dosa:Os01g0609300
nta:107799533
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.337
Rank 1 · TkA02G312240 · TK1151
Cytoplasm0.244
Rank 2 · TkA02G312240 · TK1151
Nucleus0.152
Rank 3 · TkA02G312240 · TK1151
Endoplasmic reticulum0.115
Rank 4 · TkA02G312240 · TK1151
Mitochondrion0.088
Rank 5 · TkA02G312240 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00005ABC_tran165-347 aa
PF13481AAA_25168-231 aa
PF20720nSTAND3171-202 aa
PF13191AAA_16174-274 aa
PF13555AAA_29175-195 aa
PF06068TIP49175-204 aa
PF13304AAA_21178-196 aa
PF00004AAA179-203 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G312240PF00005ABC_tran1653471.4e-1765.3
TkA02G312240PF13481AAA_251682310.0009419.6
TkA02G312240PF20720nSTAND31712020.1312.6
TkA02G312240PF13191AAA_161742740.00318.8
TkA02G312240PF13555AAA_291751950.03814.5
TkA02G312240PF06068TIP491752040.0513.5
TkA02G312240PF13304AAA_211781960.04714.4
TkA02G312240PF00004AAA1792030.01616.4
TkA02G312240PF13521AAA_281792000.02415.6
TkA02G312240PF19975DO-GTPase11792120.2611.2
TkA02G312240PF19993DO-GTPase21802000.3311.3
TkA02G312240PF02463SMC_N3203660.1911.8
TkA02G312240PF00004AAA3383540.01616.4
TkA02G312240PF13304AAA_213383640.04714.4
TkA02G312240PF19055ABC2_membrane_73804343e-0730.4
TkA02G312240PF13191AAA_164574860.00318.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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