TkA02G289150 | RubberDandelionOmics

Gene overview

TkA02G289150

Reference: TK1151 Chr: Chr02 Coordinates: 73887410-73891988 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2280 bp · TkA02G289150|TK1151|cDNA

CTCACAGCTATGACACCTGTTCTTCTTCTTGGTTTGCTGATGTTGCATGTCTGCCACATGTGGATTTTTTTTGGTATGGGAGAACTTCCTTTGCTTTCGTCTTCTTCCATGAACTTCCGATGATTCCATTATCATATAAACGGGTGTGCAAAACGAGAACCATAACTCCTTTCTTTGTCGCTCGTACCATTGCACAGGACAGCCGCCGATCGAAACTCTGATCTCCTCCTCTTTCGCTGGCCGACGCTGGTTTCACCTCC...

CDS

Download CDS FASTA

1038 bp · TkA02G289150|TK1151|CDS

ATGCAGGTTGGGAGCCTTTCCACTTCTATGAAGTTTGGCAAGGACTGTAGCTTTCTGTCAATTTCTAGTTCTCTGTTCCACATTTACACCTCTATTGCTCTGCTTCAATCCAAAGTATACGACTGGAGAAGGTACAAAGTGATATTTATATTCATTTTAATCAAATCTAATCTTGCAGTATTTCTGGCGAACGCTGCTGTGTCGGAGCGTACAGAATCACTTCTCTCACTCCACTCCGATTCCCTTCAACCCCTGACGCC...

Protein

Download Protein FASTA

345 aa · TkA02G289150|TK1151|PROTEIN

MQVGSLSTSMKFGKDCSFLSISSSLFHIYTSIALLQSKVYDWRRYKVIFIFILIKSNLAVFLANAAVSERTESLLSLHSDSLQPLTPVVSFTVFYSVSPFRKFPRCLYQDLRRRRLGRCGRRLGFLLEGNFETTYSSNAMPALKKTEPGDIRQLFERLMKEIGEPVEFELPDSLNKWKPNYTIIKRNIYLTKKVKKRVREEDDGIFCSCTSTPGSSAACGRDCHCGMLLSSCSSNCKCDNSCLNKPFHRRPMKKMKIVQT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G289150`
TK1151 ID	TkA02G289150
OH-1004 ID	LXL04_015760
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	94.700
Protein coverage (%)	TK1151 99.130 / OH-1004 64.683 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G289150

Location Chr02:73887410-73891988 (-)

Description Similar to ASHH3: Histone-lysine N-methyltransferase ASHH3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g44150`	Histone methyltransferase.	No verified direct reference in this release
`At3g59960`	Histone methyltransferase.	No verified direct reference in this release
`At4g30860`	Histone methyltransferase (By similarity).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015760 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000045 autophagosome assembly Biological Process

GO:0001763 morphogenesis of a branching structure Biological Process

GO:0006298 mismatch repair Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006368 transcription elongation by RNA polymerase II Biological Process

GO:0009553 embryo sac development Biological Process

GO:0009555 pollen development Biological Process

GO:0009910 negative regulation of flower development Biological Process

GO:0010223 secondary shoot formation Biological Process

GO:0010363 regulation of plant-type hypersensitive response Biological Process

GO:0010468 regulation of gene expression Biological Process

GO:0010498 proteasomal protein catabolic process Biological Process

KEGG gene cross-reference

ath:AT1G77300

ath:AT2G44150

ath:AT4G30860

mmu:235626

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.522

Rank 1 · TkA02G289150 · TK1151

Cytoplasm0.356

Rank 2 · TkA02G289150 · TK1151

Mitochondrion0.124

Rank 3 · TkA02G289150 · TK1151

Cell membrane0.063

Rank 4 · TkA02G289150 · TK1151

Endoplasmic reticulum0.053

Rank 5 · TkA02G289150 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17907AWS216-250 aa

PF00856SET227-239 aa

PF00856SET264-331 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G289150	`PF17907`	AWS	216	250	0.0052	17.5
TkA02G289150	`PF00856`	SET	227	239	1.9e-06	29.0
TkA02G289150	`PF00856`	SET	264	331	1.9e-06	29.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q945S8`	Arabidopsis thaliana	sp\|Q945S8\|ASHH3_ARATH Histone-lysine N-methyltransferase ASHH3	67.300%	Swiss-Prot	High
`Q9M1X9`	Arabidopsis thaliana	sp\|Q9M1X9\|ASHH4_ARATH Putative histone-lysine N-methyltransferase ASHH4	62.800%	Swiss-Prot	High
`Q949T8`	Arabidopsis thaliana	sp\|Q949T8\|ASHR3_ARATH Histone-lysine N-methyltransferase ASHR3	48.400%	Swiss-Prot	Medium

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