TkA02G276590 | RubberDandelionOmics

Gene overview

TkA02G276590

Reference: TK1151 Chr: Chr02 Coordinates: 70623049-70624069 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

843 bp · TkA02G276590|TK1151|cDNA

ATCCGTAGCATAGTTAATTTTCATCGTAGCATATGGGGAGATAAGTTTCTCACTTACAATGAGGTAGAGGATCAAGCTTGGGTTGAACAGAAAGCTAAAGAACTCAAAGACCAAGTGAGAAAACAATTAGTACTCACTGTTTCCGATGGACAAATCCAACATGTGGCACTTTTACAATATATTGATGCCGTACAACGGCTAGGTGTAGCATATCATTTTGAGGAGGAAATCGAGGAAACCTTAAATCATATTTATGTTAT...

CDS

Download CDS FASTA

843 bp · TkA02G276590|TK1151|CDS

ATCCGTAGCATAGTTAATTTTCATCGTAGCATATGGGGAGATAAGTTTCTCACTTACAATGAGGTAGAGGATCAAGCTTGGGTTGAACAGAAAGCTAAAGAACTCAAAGACCAAGTGAGAAAACAATTAGTACTCACTGTTTCCGATGGACAAATCCAACATGTGGCACTTTTACAATATATTGATGCCGTACAACGGCTAGGTGTAGCATATCATTTTGAGGAGGAAATCGAGGAAACCTTAAATCATATTTATGTTAT...

Protein

Download Protein FASTA

280 aa · TkA02G276590|TK1151|PROTEIN

IRSIVNFHRSIWGDKFLTYNEVEDQAWVEQKAKELKDQVRKQLVLTVSDGQIQHVALLQYIDAVQRLGVAYHFEEEIEETLNHIYVIYCDHWIDDSKLQNTSLWFRLLRQQGFNVSSGIFRKYMDCDGNFMECLINDAKGMLSLYEAAYMRVEGEEVLDRALTFTTIQLENISNGHLKCNDALLKIQIEQALEQPIRKRSLRIEALRYIPMYQKEASHDEVLLKFSMLDFNLLQSLHKKELSQIAQLVRMLTISIILLFY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G276590`
TK1151 ID	TkA02G276590
OH-1004 ID	LXL04_026028
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	61.000
Protein coverage (%)	TK1151 87.500 / OH-1004 27.222 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA02G276590`
Location	Chr02:70623049-70624069 (+)
Description	Similar to CASC125: (E)-beta-farnesene synthase
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_026028` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0016102 diterpenoid biosynthetic process Biological Process GO:0046246 terpene biosynthetic process Biological Process GO:0051762 sesquiterpene biosynthetic process Biological Process GO:0005737 cytoplasm Cellular Component GO:0000287 magnesium ion binding Molecular Function GO:0010333 terpene synthase activity Molecular Function GO:0034005 germacrene-A synthase activity Molecular Function GO:0080016 (-)-E-beta-caryophyllene synthase activity Molecular Function
KEGG gene cross-reference	ag:AAL79181 ag:AMP42991 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.712

Rank 1 · TkA02G276590 · TK1151

Cytoplasm0.418

Rank 2 · TkA02G276590 · TK1151

Nucleus0.139

Rank 3 · TkA02G276590 · TK1151

Peroxisome0.067

Rank 4 · TkA02G276590 · TK1151

Mitochondrion0.040

Rank 5 · TkA02G276590 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01397Terpene_synth11-192 aa

PF07997DUF169417-91 aa

PF24575TPR_Slam36-58 aa

PF24575TPR_Slam175-226 aa

PF24575TPR_Slam231-249 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G276590	`PF01397`	Terpene_synth	11	192	4.6e-52	177.2
TkA02G276590	`PF07997`	DUF1694	17	91	0.03	15.1
TkA02G276590	`PF24575`	TPR_Slam	36	58	0.92	10.6
TkA02G276590	`PF24575`	TPR_Slam	175	226	0.92	10.6
TkA02G276590	`PF24575`	TPR_Slam	231	249	0.92	10.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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