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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G210350
Reference: TK1151 Chr: Chr02 Coordinates: 53677740-53683166 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2820 bp · TkA02G210350|TK1151|cDNA

AAATCCATCTTTTCTCATGTATCCAACTAATAACGTGAAAGACAATCACAGTCGAACAACATCGTCCACCGTAATCAAGGGTTCTCGCCCGTGATACTGATCCCCACACGAGATCGATTGCACTGGCATCGCCCTCTTTCAGATCGAACAATGGCTCCTCCGGCTCAATCTCAGCGATCTCCTTCCCCATCTCAACCCTCCGGTAAAGGGGAGGTATCGGATCTGAAAATGCAGCTTCGACAGCTGGCTGGGAGTCGGGC...

CDS

Download CDS FASTA

2430 bp · TkA02G210350|TK1151|CDS

ATGGCTCCTCCGGCTCAATCTCAGCGATCTCCTTCCCCATCTCAACCCTCCGGTAAAGGGGAGGTATCGGATCTGAAAATGCAGCTTCGACAGCTGGCTGGGAGTCGGGCACCTGGGACTGACGACTCTAAACGAGATCTCTTCAAGAAGGTGATCTCTTACATGACCATAGGGATCGATGTGTCCTCAGTTTTCAGCGAGATGGTGATGTGCTCGGCTACTTCAGATATTGTTTTGAAGAAAATGTGTTACCTGTATGT...

Protein

Download Protein FASTA

809 aa · TkA02G210350|TK1151|PROTEIN

MAPPAQSQRSPSPSQPSGKGEVSDLKMQLRQLAGSRAPGTDDSKRDLFKKVISYMTIGIDVSSVFSEMVMCSATSDIVLKKMCYLYVGNYAKYNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVPNLVEYLVGPLGAGLKDGNSYVRMVAAVGVLKLYHISASTCLDADFPDLLKHLMLNDPDAQVVANCLSALQEIWGLEASSSEEAAREREGLISKPIIYFLLNRIKEFSEWAQCTILELVSKYAPPDSNEIF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G210350
TK1151 IDTkA02G210350
OH-1004 IDLXL04_015821
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.300
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G210350
LocationChr02:53677740-53683166 (+)
DescriptionSimilar to BETAA-AD: Beta-adaptin-like protein A
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g11490 Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_015821 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006605 protein targeting Biological Process
GO:0006886 intracellular protein transport Biological Process
GO:0006897 endocytosis Biological Process
GO:0016192 vesicle-mediated transport Biological Process
GO:0061938 protein localization to somatodendritic compartment Biological Process
GO:0072583 clathrin-dependent endocytosis Biological Process
GO:0005794 Golgi apparatus Cellular Component
GO:0005802 trans-Golgi network Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0005905 clathrin-coated pit Cellular Component
GO:0009507 chloroplast Cellular Component
KEGG gene cross-reference
ath:AT5G11490
bta:282183
ddi:DDB_G0283319
mmu:67489
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.522
Rank 1 · TkA02G210350 · TK1151
Golgi apparatus0.432
Rank 2 · TkA02G210350 · TK1151
Nucleus0.174
Rank 3 · TkA02G210350 · TK1151
Lysosome / Vacuole0.162
Rank 4 · TkA02G210350 · TK1151
Endoplasmic reticulum0.130
Rank 5 · TkA02G210350 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01602Adaptin_N39-552 aa
PF05918API570-127 aa
PF23227HEAT_MROH2B_C102-149 aa
PF02985HEAT103-127 aa
PF13646HEAT_2110-199 aa
PF12717Cnd1115-287 aa
PF13513HEAT_EZ119-152 aa
PF23271HEAT_GCN1124-202 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G210350PF01602Adaptin_N395524.6e-93313.3
TkA02G210350PF05918API5701270.04413.4
TkA02G210350PF23227HEAT_MROH2B_C1021490.0009119.3
TkA02G210350PF02985HEAT1031271e-0629.1
TkA02G210350PF13646HEAT_21101994.4e-0730.8
TkA02G210350PF12717Cnd11152871.7e-45155.7
TkA02G210350PF13513HEAT_EZ1191520.5811.5
TkA02G210350PF23271HEAT_GCN11242020.00617.4
TkA02G210350PF02985HEAT1401571e-0629.1
TkA02G210350PF13513HEAT_EZ1762020.5811.5
TkA02G210350PF23227HEAT_MROH2B_C1822020.0009119.3
TkA02G210350PF02985HEAT1832021e-0629.1
TkA02G210350PF23227HEAT_MROH2B_C2613100.0009119.3
TkA02G210350PF02985HEAT2622891e-0629.1
TkA02G210350PF13646HEAT_22632804.4e-0730.8
TkA02G210350PF08988T3SS_needle_E2652800.3112.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LDK9Arabidopsis thalianasp|Q9LDK9|APBLA_ARATH Beta-adaptin-like protein A75.000%Swiss-ProtHigh

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