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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G209120
Reference: TK1151 Chr: Chr02 Coordinates: 53367176-53376434 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

6723 bp · TkA02G209120|TK1151|cDNA

TTTATAAACTCCGAGGACCATTTATGTAATTTTGTCTTTTTTTAATTAAAAAAAAAAAGTCTTGTCCCTCTCTCACTCAAGCGTTTGCTTCTCTCTCGCACTCTCCCCTCCCCTCCCCTCCGTCTTCGCCTGCGTCTGCTGCCTCACTCGTCGTTTCCCTCCTTGCCGTCGCCGTCTGCCACCCCGTACCCGTCTCTTCTCATCCCTTTCCTTCTCCTCGTCTCGCTGCTCCCCTCATAACAAGGCCAAAGGAAATAGAG...

CDS

Download CDS FASTA

6045 bp · TkA02G209120|TK1151|CDS

ATGAGTAGTAGACTTCAAAACCCATTTGTTGCGGCAGATTTCCAATCCTCCTTGAAGCCAAAAAACATAAACGGTTTGGGTTATCTCGGCAACAAATTCCCCAGAAAATCTCGTTATGATATCATTCCACGTGCCAAAAAAAACGACTGGATATCTCATGGGATTAGGTTTTCACAATCATGCGGGGAAAATGTTGAGATCTTATGGAAGAATATAGGATTAAGAAGTGGTTTTGTGGTGAAATCCGTGAAAGAACCTTT...

Protein

Download Protein FASTA

2014 aa · TkA02G209120|TK1151|PROTEIN

MSSRLQNPFVAADFQSSLKPKNINGLGYLGNKFPRKSRYDIIPRAKKNDWISHGIRFSQSCGENVEILWKNIGLRSGFVVKSVKEPFTRSKAIVRSLSTVWEEGLLLFRCSVFCAVISGVCLLLWYGQLKAKTLIEAKLLPSVCTALSDYIQRDLHFGKVRSVSPLSITLESCSIGPHKEEFSCGEVPTLKLRVHPFSSLRTGKIVVDAVLSNPTLLVSQKRNYSWLGIPFSDGVLQKHLSTEEGIDSRTKTRRIAREQT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G209120
TK1151 IDTkA02G209120
OH-1004 IDLXL04_015816
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.900
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G209120
LocationChr02:53367176-53376434 (-)
DescriptionSimilar to TIC236: Protein TIC236, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g25660 Part of the inner chloroplast membrane translocon complex (TIC) which associates with the outer chloroplast membrane translocon complex (TOC) and forms a supercomplex involved in protein precursor import into the chloroplast stroma. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0179400 Part of the inner chloroplast membrane translocon complex (TIC) which associates with the outer chloroplast membrane translocon complex (TOC) and forms a supercomplex involved in protein precursor import into the chloroplast stroma (By similarity).
Amyloplast-localized SUBSTANDARD STARCH GRAIN4 protein influences the size of starch grains in rice endosperm.2014 · DOI: 10.1104/pp.113.229591
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_015816 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009306 protein secretion Biological Process
GO:0009660 amyloplast organization Biological Process
GO:0005886 plasma membrane Cellular Component
GO:0009501 amyloplast Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009706 chloroplast inner membrane Cellular Component
GO:0031972 chloroplast intermembrane space Cellular Component
KEGG gene cross-reference
ath:AT2G25660
dosa:Os01g0179400
osa:4323878
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.689
Rank 1 · TkA02G209120 · TK1151
Mitochondrion0.150
Rank 2 · TkA02G209120 · TK1151
Cytoplasm0.086
Rank 3 · TkA02G209120 · TK1151
Nucleus0.085
Rank 4 · TkA02G209120 · TK1151
Endoplasmic reticulum0.071
Rank 5 · TkA02G209120 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29741R1_ORF1_N187-207 aa
PF29741R1_ORF1_N453-473 aa
PF04357TamB598-642 aa
PF04357TamB790-864 aa
PF27051TamB_N837-871 aa
PF27051TamB_N961-999 aa
PF27051TamB_N1368-1428 aa
PF27051TamB_N1536-1565 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G209120PF29741R1_ORF1_N1872070.1312.8
TkA02G209120PF29741R1_ORF1_N4534730.1312.8
TkA02G209120PF04357TamB5986421.3e-1764.9
TkA02G209120PF04357TamB7908641.3e-1764.9
TkA02G209120PF27051TamB_N8378710.0001221.2
TkA02G209120PF27051TamB_N9619990.0001221.2
TkA02G209120PF27051TamB_N136814280.0001221.2
TkA02G209120PF27051TamB_N153615650.0001221.2
TkA02G209120PF04357TamB154715751.3e-1764.9
TkA02G209120PF04357TamB160219961.3e-1764.9
TkA02G209120PF27051TamB_N164416710.0001221.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4ISL7Arabidopsis thalianasp|F4ISL7|TI236_ARATH Protein TIC236, chloroplastic63.500%Swiss-ProtHigh
W0RYD3Oryza sativa subsp. japonicasp|W0RYD3|SSG4_ORYSJ Protein SUBSTANDARD STARCH GRAIN 4, chloroplastic59.000%Swiss-ProtHigh

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