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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G184890
Reference: TK1151 Chr: Chr02 Coordinates: 47559176-47560678 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1503 bp · TkA02G184890|TK1151|cDNA

ATGCTCTTCCGAGGAAGATGCAATCAACTTCCTCATCAGCTAACGGTGGCTGTCGCCATTGGTGTCCGATTTTATTCTTCAGATTTGGAATTTGAAGTCAAAAAAATTACAAAAATCATCAACGACCATCCTTTTCCTGATCAACCTATTTATCCAAAACTTGCCCAAACTATCCCTTCAGCTACCCTTTCAACCACCTTAGTAGAAAATGTTCTTGGCTCTCTCTTTGCGTCCCACTCTAATGGCCTTAAAGCTTTTGA...

CDS

Download CDS FASTA

1503 bp · TkA02G184890|TK1151|CDS

ATGCTCTTCCGAGGAAGATGCAATCAACTTCCTCATCAGCTAACGGTGGCTGTCGCCATTGGTGTCCGATTTTATTCTTCAGATTTGGAATTTGAAGTCAAAAAAATTACAAAAATCATCAACGACCATCCTTTTCCTGATCAACCTATTTATCCAAAACTTGCCCAAACTATCCCTTCAGCTACCCTTTCAACCACCTTAGTAGAAAATGTTCTTGGCTCTCTCTTTGCGTCCCACTCTAATGGCCTTAAAGCTTTTGA...

Protein

Download Protein FASTA

500 aa · TkA02G184890|TK1151|PROTEIN

MLFRGRCNQLPHQLTVAVAIGVRFYSSDLEFEVKKITKIINDHPFPDQPIYPKLAQTIPSATLSTTLVENVLGSLFASHSNGLKAFEFFKFSLQFCPSSDAFEKTLHILTRMRDFNKAWELIEQVHKTHPSLITLKSMSIMLSRTAKFQSFDETLEAFQKMENKLSDCKQFGTDEFNLLLRAFCTQRQMKEARSVFNRLYPRFSPNTKTMNILLLGFKESGDITSVELFYHDMIRRGFKPNIITYNIRIDSYCKGGRFLD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G184890
TK1151 IDTkA02G184890
OH-1004 IDLXL04_030286
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)26.500
Protein coverage (%)TK1151 39.200 / OH-1004 16.756
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G184890
LocationChr02:47559176-47560678 (-)
DescriptionSimilar to At1g77360: Pentatricopeptide repeat-containing protein At1g77360, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g61360 Pentatricopeptide repeat-containing protein At3g61360. No verified direct reference in this release
At1g02420 Putative pentatricopeptide repeat-containing protein At1g02420. No verified direct reference in this release
At5g15010 Pentatricopeptide repeat-containing protein At5g15010, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030286 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007165 signal transduction Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
GO:0003729 mRNA binding Molecular Function
GO:0004672 protein kinase activity Molecular Function
GO:0004674 protein serine/threonine kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0106310 protein serine kinase activity Molecular Function
KEGG gene cross-reference
ath:AT1G11050
ath:AT1G52640
ath:AT1G71060
ath:AT1G77360
ath:AT2G48010
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.836
Rank 1 · TkA02G184890 · TK1151
Plastid0.093
Rank 2 · TkA02G184890 · TK1151
Nucleus0.057
Rank 3 · TkA02G184890 · TK1151
Cytoplasm0.037
Rank 4 · TkA02G184890 · TK1151
Cell membrane0.011
Rank 5 · TkA02G184890 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070MSC6_N53-229 aa
PF01535PPR70-90 aa
PF12921ATP1394-132 aa
PF02284COX5A94-127 aa
PF17177PPR_long96-222 aa
PF28774DUF845798-126 aa
PF29834SOV1_C102-127 aa
PF13041PPR_2106-125 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G184890PF29070MSC6_N532291.3e-1661.4
TkA02G184890PF01535PPR70909.6e-36120.3
TkA02G184890PF12921ATP13941328.4e-0626.4
TkA02G184890PF02284COX5A941270.04414.6
TkA02G184890PF17177PPR_long962221.4e-1144.9
TkA02G184890PF28774DUF8457981260.1313.3
TkA02G184890PF29834SOV1_C1021270.007516.0
TkA02G184890PF13041PPR_21061258.3e-47157.8
TkA02G184890PF13812PPR_31061291e-1558.2
TkA02G184890PF23276TPR_241071611.7e-1557.8
TkA02G184890PF13428TPR_141071310.01916.4
TkA02G184890PF01535PPR1081249.6e-36120.3
TkA02G184890PF00566RabGAP-TBC1271480.1112.9
TkA02G184890PF13041PPR_21381648.3e-47157.8
TkA02G184890PF01535PPR1391639.6e-36120.3
TkA02G184890PF28774DUF84571471620.1313.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M2C8Arabidopsis thalianasp|Q9M2C8|PP291_ARATH Pentatricopeptide repeat-containing protein At3g6136058.000%Swiss-ProtMedium
Q9FZ19Arabidopsis thalianasp|Q9FZ19|PPR5_ARATH Putative pentatricopeptide repeat-containing protein At1g0242036.400%Swiss-ProtLow
Q9LFQ4Arabidopsis thalianasp|Q9LFQ4|PP383_ARATH Pentatricopeptide repeat-containing protein At5g15010, mitochondrial24.700%Swiss-ProtLow

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