RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G160500
Reference: TK1151 Chr: Chr02 Coordinates: 41165051-41167440 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1010 bp · TkA02G160500|TK1151|cDNA

GTACCATGCACTCCACTACCGCCATACTACATTGGCCACTGCCATGTGTGTACGATTATTTGCGTGAACATTCTACTTCTCCATTCATCCGTTCTTTCCATACTCCATAGAAGATCCAAAAGAGATTGTTCTTCATTCCGCATATAAGGTTGACGCTAGCGATGTTTGGTGTTTTGCGGCGAAGCGTTGTCAGCGGATGCTCCTCTGCTTCGATCATAGGAAAATCATGGCCAAGGACTTGTCCTTTAGCATCTCCAACT...

CDS

Download CDS FASTA

831 bp · TkA02G160500|TK1151|CDS

ATGTTTGGTGTTTTGCGGCGAAGCGTTGTCAGCGGATGCTCCTCTGCTTCGATCATAGGAAAATCATGGCCAAGGACTTGTCCTTTAGCATCTCCAACTGCAACTTGTTTCACTTCAGAAGGAGAGGTGTTACTCAATCCAAGAATTGTTGGAAAATATCAAATTGTATGTCATACTGTCCAAAGTGGTGTAGTGAATATAAGGCCATTAAGGAAAGTTATGACCAGTCTTAAGCCATGTGTCAGCATGCAAATGCAATC...

Protein

Download Protein FASTA

276 aa · TkA02G160500|TK1151|PROTEIN

MFGVLRRSVVSGCSSASIIGKSWPRTCPLASPTATCFTSEGEVLLNPRIVGKYQIVCHTVQSGVVNIRPLRKVMTSLKPCVSMQMQSRMFSSDNGDLVDVAVPFMGESISYGTLATFLKKPGEMVEVNEPIAQVKTDKVTINVASPKAGVIQEFVANEGDSVESGTKIAIISKSAAASPPPPKDETTPGGIKEEMKEMKKKMDEILDNLAVRKEMKKMKKELESDALGLRKEIKEIRECLSFHGVGFVILISFLIFLCLS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G160500
TK1151 IDTkA02G160500
OH-1004 IDLXL04_016294
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)78.400
Protein coverage (%)TK1151 82.246 / OH-1004 26.720
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G160500
LocationChr02:41165051-41167440 (-)
DescriptionSimilar to At4g26910: Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g26910 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). No verified direct reference in this release
At5g55070 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_016294 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006099 tricarboxylic acid cycle Biological Process
GO:0006103 2-oxoglutarate metabolic process Biological Process
GO:0006104 succinyl-CoA metabolic process Biological Process
GO:0033512 L-lysine catabolic process to acetyl-CoA via L-saccharopine Biological Process
GO:0005634 nucleus Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005759 mitochondrial matrix Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009536 plastid Cellular Component
GO:0022626 cytosolic ribosome Cellular Component
GO:0045252 oxoglutarate dehydrogenase complex Cellular Component
GO:0004149 dihydrolipoyllysine-residue succinyltransferase activity Molecular Function
KEGG gene cross-reference
ath:AT4G26910
ath:AT5G55070
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.666
Rank 1 · TkA02G160500 · TK1151
Plastid0.332
Rank 2 · TkA02G160500 · TK1151
Cytoplasm0.062
Rank 3 · TkA02G160500 · TK1151
Nucleus0.042
Rank 4 · TkA02G160500 · TK1151
Cell membrane0.019
Rank 5 · TkA02G160500 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25919BSH_CusB47-72 aa
PF13375RnfC_N51-83 aa
PF00364Biotin_lipoyl99-171 aa
PF01551Peptidase_M23108-137 aa
PF26018BSH_RND_rel110-151 aa
PF25997BSH_YhbJ111-169 aa
PF13375RnfC_N111-153 aa
PF25973BSH_CzcB112-143 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G160500PF25919BSH_CusB47727.5e-0626.4
TkA02G160500PF13375RnfC_N51830.1712.7
TkA02G160500PF00364Biotin_lipoyl991715.3e-1658.9
TkA02G160500PF01551Peptidase_M231081370.02315.6
TkA02G160500PF26018BSH_RND_rel1101511.9e-0525.1
TkA02G160500PF25997BSH_YhbJ1111690.0003321.4
TkA02G160500PF13375RnfC_N1111530.1712.7
TkA02G160500PF25973BSH_CzcB1121430.001119.5
TkA02G160500PF25984BSH_YknX1121520.008716.5
TkA02G160500PF25917BSH_RND1131710.1113.0
TkA02G160500PF07831PYNP_C1161360.04514.1
TkA02G160500PF25919BSH_CusB1181717.5e-0626.4
TkA02G160500PF19189Mtf21282180.07313.5
TkA02G160500PF13375RnfC_N1291710.1712.7
TkA02G160500PF26077BSH_Fcp11351710.2712.1
TkA02G160500PF25973BSH_CzcB1412090.001119.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8H107Arabidopsis thalianasp|Q8H107|ODO2B_ARATH Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial46.000%Swiss-ProtMedium
Q9FLQ4Arabidopsis thalianasp|Q9FLQ4|ODO2A_ARATH Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial40.800%Swiss-ProtMedium

JBrowse

View in Genome Browser