TkA02G148130 | RubberDandelionOmics

Gene overview

TkA02G148130

Reference: TK1151 Chr: Chr02 Coordinates: 38148329-38149918 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1104 bp · TkA02G148130|TK1151|cDNA

CGGGGTCGGGGAAAACACATACAATGATGGGTACACCGGGAAACGTAGATGAAAAAGGATTGATACCGCGGTCTTTAGAACAAATATTTAAGTCCCGAGGCATCCTTCAAAAACAAGGGTGGAAGTATGAAATGCAGGTTTCGATGCTGGAGATATACAATGAGACGATACGTGATTTATTATCACCAAACCGGGGTTGTTCAAGTGAGTCAGGAAAGTATGTAATTAAACACGATGCAAATGGCAATACACATGTCTCC...

CDS

Download CDS FASTA

777 bp · TkA02G148130|TK1151|CDS

ATGATGGGTACACCGGGAAACGTAGATGAAAAAGGATTGATACCGCGGTCTTTAGAACAAATATTTAAGTCCCGAGGCATCCTTCAAAAACAAGGGTGGAAGTATGAAATGCAGGTTTCGATGCTGGAGATATACAATGAGACGATACGTGATTTATTATCACCAAACCGGGGTTGTTCAAGTGAGTCAGGAAAGTATGTAATTAAACACGATGCAAATGGCAATACACATGTCTCCGATTTGACCATTGTGGATGTGCG...

Protein

Download Protein FASTA

258 aa · TkA02G148130|TK1151|PROTEIN

MMGTPGNVDEKGLIPRSLEQIFKSRGILQKQGWKYEMQVSMLEIYNETIRDLLSPNRGCSSESGKYVIKHDANGNTHVSDLTIVDVRSEREVSFLLNRAEQSRSVGKTQMNEQSSRSHFVFTLRIIGVNESTEQQVQGVLNLIDLAGSERLSKSGSTGDRLTETQAINKSLSSLSNVIFALARKEHVPFRDSKLTYLLQPCLGGDSKTLMVVNVSPAASSANESLCSLRFAARVNACEIGTPRRQTSVRQLDARLSYG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G148130`
TK1151 ID	TkA02G148130
OH-1004 ID	LXL04_016385
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 86.434 / OH-1004 7.304 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G148130

Location Chr02:38148329-38149918 (+)

Description Similar to KIN14N: Kinesin-like protein KIN-14N

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g54670`	Kinesin-like protein KIN-14N.	No verified direct reference in this release
`At4g27180`	Kinesin-like protein KIN-14M.	No verified direct reference in this release
`At4g21270`	Kinesin that supports microtubule movement in an ATP- dependent manner and has a minus-end directed polarity.	The Arabidopsis ATK1 gene is required for spindle morphogenesis in male meiosis.2002 · DOI: 10.1242/dev.129.10.2401 Arabidopsis thaliana protein, ATK1, is a minus-end directed kinesin that exhibits non-processive movement.2002 · DOI: 10.1002/cm.10045
`At4g05190`	Kinesin that supports microtubule movement in an ATP- dependent manner and that functions as a minus-end directed motor as well as a plus-end tracking protein.	A minus-end-directed kinesin with plus-end tracking protein activity is involved in spindle morphogenesis.2005 · DOI: 10.1091/mbc.e04-10-0935 The kinesin ATK5 functions in early spindle assembly in Arabidopsis.2007 · DOI: 10.1105/tpc.106.047613

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0105700`	Kinesin-like protein KIN-14N.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016385 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000226 microtubule cytoskeleton organization Biological Process

GO:0007018 microtubule-based movement Biological Process

GO:0009971 anastral spindle assembly involved in male meiosis Biological Process

GO:0051225 spindle assembly Biological Process

GO:0051301 cell division Biological Process

GO:0000776 kinetochore Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005819 spindle Cellular Component

GO:0005871 kinesin complex Cellular Component

GO:0005872 minus-end kinesin complex Cellular Component

KEGG gene cross-reference

ath:AT4G05190

ath:AT4G21270

ath:AT4G27180

ath:AT5G54670

dosa:Os07g0105700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.740

Rank 1 · TkA02G148130 · TK1151

Nucleus0.372

Rank 2 · TkA02G148130 · TK1151

Cell membrane0.078

Rank 3 · TkA02G148130 · TK1151

Mitochondrion0.071

Rank 4 · TkA02G148130 · TK1151

Golgi apparatus0.043

Rank 5 · TkA02G148130 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00225Kinesin1-236 aa

PF16796Microtub_bd9-53 aa

PF16796Microtub_bd103-144 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G148130	`PF00225`	Kinesin	1	236	1e-80	271.9
TkA02G148130	`PF16796`	Microtub_bd	9	53	3.9e-09	37.3
TkA02G148130	`PF16796`	Microtub_bd	103	144	3.9e-09	37.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P46875`	Arabidopsis thaliana	sp\|P46875\|KN14N_ARATH Kinesin-like protein KIN-14N	78.400%	Swiss-Prot	High
`P46864`	Arabidopsis thaliana	sp\|P46864\|KN14M_ARATH Kinesin-like protein KIN-14M	76.500%	Swiss-Prot	High
`Q07970`	Arabidopsis thaliana	sp\|Q07970\|KN14C_ARATH Kinesin-like protein KIN-14C	77.200%	Swiss-Prot	High
`F4JGP4`	Arabidopsis thaliana	sp\|F4JGP4\|KN14D_ARATH Kinesin-like protein KIN-14D	76.900%	Swiss-Prot	High
`A3BFT0`	Oryza sativa subsp. japonica	sp\|A3BFT0\|KN14N_ORYSJ Kinesin-like protein KIN-14N	76.800%	Swiss-Prot	High

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